Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,925,438 – 1,925,558 |
Length | 120 |
Max. P | 0.592097 |
Location | 1,925,438 – 1,925,558 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -39.58 |
Consensus MFE | -37.82 |
Energy contribution | -38.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.09 |
Structure conservation index | 0.96 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1925438 120 + 22224390 CUCACCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA ....(((.(((..((.(.(((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. ( -41.60) >DroSec_CAF1 9408 120 + 1 CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGCAGGGCUCGAACAAAAACUAAA .........(((((..(((((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...)))))))))((((.(.....).))))....))...))))). ( -41.10) >DroSim_CAF1 9034 120 + 1 CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA .........(((((..(((((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...)))))))))((((.(.....).))))....))...))))). ( -41.20) >DroEre_CAF1 9454 120 + 1 CUCAUCCACUUAGCGCUGAGGAGCUCCUGCCGCAACUGCAGGAGCAGCGCAGGUUUCUCGACGAUGCAAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCAAACAAAAACUAAA ....(((.(((..((.(.(((((((((.(.(((..((((....)))).(((.(((....)))..)))......))).).))))))))).).))..)))..)))................. ( -37.60) >DroYak_CAF1 9515 120 + 1 CUCAUCCGCUUAGCGCAGAGGAGCUCCUACCGCAACUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCAAACAAAAACUAAA ....(((.(((..(((..(((((((((...(((..((((....)))).(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. ( -36.40) >consensus CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA ....(((.(((..((.(.(((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. (-37.82 = -38.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006