Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,543,924 – 17,544,164 |
Length | 240 |
Max. P | 0.968997 |
Location | 17,543,924 – 17,544,044 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -22.36 |
Energy contribution | -22.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.42 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17543924 120 + 22224390 CUUAGCCAAGACGCGAACCCAUACAGGUGCGUGUUACCCAGACAGCAACCGACACAGAAGUACCGCAUUUCGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGC .........((((((.(((......))).)))))).........((..........(((((.....)))))((((((...........))))))..((((((((.....)))))))).)) ( -31.60) >DroSec_CAF1 36041 120 + 1 UUUAGCGAAGAUGCGAACCCACACAGAUGCGUUUAUCCCAGACAUCAACCGACACAGAAGUGCCGCAUUUUGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGC ....(((((((((...(((.(((.((((((((((.....)))).......(.(((....))).)))))))))).)))..)))))))..........((((((((.....)))))))).)) ( -33.30) >DroSim_CAF1 25554 120 + 1 UUUAGCGAAGACGCGAACCCACACAGAUGCGUUUAUCCCAGACAUCAACCGACACAGAAGUGCCGCAUUUUGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGC ....(((....)))...........(((((((((.....)))).......(.(((....))).))))))((((((((...........))))))))((((((((.....))))))))... ( -31.20) >DroYak_CAF1 32861 117 + 1 GUUAGCUAAGACACGAACCGAAACAAGUGCACCUUCCCCAGACAGCAACCGAUAUAGAAAUAGCACAUUUCGUUGGUA---UUUUCAUACCAACAAUUGGCGCGAAAGCCGUGCCAAAGC ....(((............((((...((((..((.....)).............((....)))))).))))(((((((---(....))))))))..((((((((.....))))))))))) ( -28.50) >consensus UUUAGCGAAGACGCGAACCCACACAGAUGCGUUUAUCCCAGACAGCAACCGACACAGAAGUACCGCAUUUCGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGC ....((..................((((((((((.....)))).......(.(((....))).))))))).((((((...........))))))..((((((((.....)))))))).)) (-22.36 = -22.43 + 0.06)
Location | 17,543,924 – 17,544,044 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -41.68 |
Consensus MFE | -30.80 |
Energy contribution | -30.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.29 |
Mean z-score | -2.25 |
Structure conservation index | 0.74 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17543924 120 - 22224390 GCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACGAAAUGCGGUACUUCUGUGUCGGUUGCUGUCUGGGUAACACGCACCUGUAUGGGUUCGCGUCUUGGCUAAG ((.(((((((((...(((((....((((((((((.......))))))))))..))))).....)))))))))..))....(((.(((.((((((((....))))..)))).))).))).. ( -40.70) >DroSec_CAF1 36041 120 - 1 GCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUCUGGGAUAAACGCAUCUGUGUGGGUUCGCAUCUUCGCUAAA ((.(((((.((.....)).)))))((((((((((.......))))))))))...))(((((....)))))(((.(((((...((((..((((....))))..)))))))))...)))... ( -41.60) >DroSim_CAF1 25554 120 - 1 GCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUCUGGGAUAAACGCAUCUGUGUGGGUUCGCGUCUUCGCUAAA ((.(((((.((.....)).)))))((((((((((.......))))))))))...))(((((....)))))(((.(((((...((((..((((....))))..)))))))))...)))... ( -41.20) >DroYak_CAF1 32861 117 - 1 GCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUAUGAAAA---UACCAACGAAAUGUGCUAUUUCUAUAUCGGUUGCUGUCUGGGGAAGGUGCACUUGUUUCGGUUCGUGUCUUAGCUAAC (((..((((((((....))(((....((((((((....)---)))))))(((((((((..(((((....(((...)))....)))))...))))..)))))))).))))))..))).... ( -43.20) >consensus GCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUCUGGGAAAAACGCACCUGUGUGGGUUCGCGUCUUCGCUAAA ...((((((((((..((..((...((((((((((.......))))))))))...))(((((....)))))))..))))).((.((..(((((....)))))...)).)).....))))). (-30.80 = -30.80 + 0.00)
Location | 17,543,964 – 17,544,084 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -30.02 |
Energy contribution | -29.65 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.84 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17543964 120 + 22224390 GACAGCAACCGACACAGAAGUACCGCAUUUCGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGCAGAGAUGCGAUAAAGAAGAGGAGUGCAGAGAGGCGGCAGU ....((..((.((......))...(((((((((((((...........))))))..((((((((.....)))))))).(((....)))...........))))))).....))..))... ( -36.50) >DroSec_CAF1 36081 120 + 1 GACAUCAACCGACACAGAAGUGCCGCAUUUUGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGCAGAGAUGCGAUAAAGAAGAGGAGUGCAGAGAGGCGGCAGU ....................((((((.((((....(((((.(((((..........((((((((.....)))))))).(((....)))......)))))..))))).)))).)))))).. ( -36.90) >DroSim_CAF1 25594 120 + 1 GACAUCAACCGACACAGAAGUGCCGCAUUUUGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGCAGAGAUGCGAUAAAGAAGAGGAGUGCAGAGAGGCGGCAGU ....................((((((.((((....(((((.(((((..........((((((((.....)))))))).(((....)))......)))))..))))).)))).)))))).. ( -36.90) >DroYak_CAF1 32901 112 + 1 GACAGCAACCGAUAUAGAAAUAGCACAUUUCGUUGGUA---UUUUCAUACCAACAAUUGGCGCGAAAGCCGUGCCAAAGCGGAGAUGCGAUUAAGAAGAGGCGCGCAGA-----GGCAGU ....((..(((.....(((((.....)))))(((((((---(....))))))))..((((((((.....))))))))..)))...((((.((......))...))))..-----.))... ( -33.10) >consensus GACAGCAACCGACACAGAAGUACCGCAUUUCGUUGGUAUUAUUUUCACACCAACAAUUGGCGCGAAAGCCGUGCCAAAGCAGAGAUGCGAUAAAGAAGAGGAGUGCAGAGAGGCGGCAGU ........((..(((....))).((((((((((((((...........))))))..((((((((.....))))))))....))))))))..........))...((.........))... (-30.02 = -29.65 + -0.37)
Location | 17,543,964 – 17,544,084 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -34.84 |
Consensus MFE | -30.61 |
Energy contribution | -29.68 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.20 |
Mean z-score | -2.25 |
Structure conservation index | 0.88 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17543964 120 - 22224390 ACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACGAAAUGCGGUACUUCUGUGUCGGUUGCUGUC ((.((.(((.....((((..........((((((((.((....(((((.((.....)).)))))..((((((((.......)))))))))).)))))))).....)))).))).)).)). ( -35.66) >DroSec_CAF1 36081 120 - 1 ACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUC .(.(((((......))................((((.......(((((.((.....)).)))))((((((((((.......)))))))))).))))(((((....)))))))).)..... ( -35.30) >DroSim_CAF1 25594 120 - 1 ACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUC .(.(((((......))................((((.......(((((.((.....)).)))))((((((((((.......)))))))))).))))(((((....)))))))).)..... ( -35.30) >DroYak_CAF1 32901 112 - 1 ACUGCC-----UCUGCGCGCCUCUUCUUAAUCGCAUCUCCGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUAUGAAAA---UACCAACGAAAUGUGCUAUUUCUAUAUCGGUUGCUGUC ...((.-----...))(((((...........((......))..(((((((((......)))..((((((((((....)---)))))))))...))))))..........)).))).... ( -33.10) >consensus ACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAUAAUACCAACAAAAUGCGGCACUUCUGUGUCGGUUGAUGUC .(.(((..........................((((.......(((((.((.....)).)))))((((((((((.......)))))))))).))))(((((....)))))))).)..... (-30.61 = -29.68 + -0.94)
Location | 17,544,004 – 17,544,124 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -36.52 |
Consensus MFE | -34.05 |
Energy contribution | -34.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.93 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17544004 120 - 22224390 CGCCGCGCUUGUGUGCGAUUCCACUGGUGUUUCUCCACAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAU .((((.(((.(((((((((......(((((((......)))).)))((......)).............)))))))....))...))).))))((((((((((.....)))))))))).. ( -37.60) >DroSec_CAF1 36121 120 - 1 CGCCGCGCUUGUGUGUGAUUCCACUGGUGUUUCUCCGCAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAU .((((.(((.(((((((((......((.......))(((((..(....)..))))).............)))))))....))...))).))))((((((((((.....)))))))))).. ( -37.80) >DroSim_CAF1 25634 120 - 1 CGCCGCGCUUGUGUGUGAUUCCACUGGUGUUUCUCCGCAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAU .((((.(((.(((((((((......((.......))(((((..(....)..))))).............)))))))....))...))).))))((((((((((.....)))))))))).. ( -37.80) >DroYak_CAF1 32939 114 - 1 CGCCGCGCUUGUGUGCGACUCCGCUGGUGUUUCUCCACAGACUGCC-----UCUGCGCGCCUCUUCUUAAUCGCAUCUCCGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUAUGAAAA- .((((.(((.((((((((.......(((((.......((((.....-----)))).))))).........)))))....)))...))).))))(((((..(((.....)))..))))).- ( -32.89) >consensus CGCCGCGCUUGUGUGCGAUUCCACUGGUGUUUCUCCACAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCUGCUUUGGCACGGCUUUCGCGCCAAUUGUUGGUGUGAAAAU .((((.(((.(((((((((......((.((......(((((..........))))))).))........)))))))....))...))).))))((((((((((.....)))))))))).. (-34.05 = -34.62 + 0.56)
Location | 17,544,044 – 17,544,164 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -27.97 |
Energy contribution | -28.34 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.91 |
Structure conservation index | 0.87 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17544044 120 - 22224390 AACCCGCGGUCUGGAUUUUCACACACGUCCGCUUUCGAAUCGCCGCGCUUGUGUGCGAUUCCACUGGUGUUUCUCCACAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCU .....((((((((((...((.((((((..(((............)))..)))))).)).)))....(((......)))))))))).((......))........................ ( -30.20) >DroSec_CAF1 36161 120 - 1 AACCCGCGGCCUGGAUUUUCACACACGUCCGCUUUCGAAUCGCCGCGCUUGUGUGUGAUUCCACUGGUGUUUCUCCGCAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCU .....((((((((((...(((((((((..(((............)))..))))))))).))))..)))........(((((..(....)..)))))...............)))...... ( -35.40) >DroSim_CAF1 25674 120 - 1 AACCCGCGGCCUGGAUUUUCACACACGUCCGCUUUCGAAUCGCCGCGCUUGUGUGUGAUUCCACUGGUGUUUCUCCGCAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCU .....((((((((((...(((((((((..(((............)))..))))))))).))))..)))........(((((..(....)..)))))...............)))...... ( -35.40) >DroYak_CAF1 32978 115 - 1 AACCCGCGGCCUGGAUUUUCACACACGUCCGCUUUCGAAUCGCCGCGCUUGUGUGCGACUCCGCUGGUGUUUCUCCACAGACUGCC-----UCUGCGCGCCUCUUCUUAAUCGCAUCUCC .....((((...(((...((.((((((..(((............)))..)))))).)).)))((.(((((((......)))).)))-----...))..............))))...... ( -27.10) >consensus AACCCGCGGCCUGGAUUUUCACACACGUCCGCUUUCGAAUCGCCGCGCUUGUGUGCGAUUCCACUGGUGUUUCUCCACAGACUGCCGCCUCUCUGCACUCCUCUUCUUUAUCGCAUCUCU .....(((((.((((...(((((((((..(((............)))..))))))))).))))(((.((......)))))...))))).....(((................)))..... (-27.97 = -28.34 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:50 2006