Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,924,924 – 1,925,044 |
Length | 120 |
Max. P | 0.999269 |
Location | 1,924,924 – 1,925,044 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -38.34 |
Consensus MFE | -35.90 |
Energy contribution | -35.14 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.17 |
Mean z-score | -2.11 |
Structure conservation index | 0.94 |
SVM decision value | 3.47 |
SVM RNA-class probability | 0.999269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1924924 120 + 22224390 CCGCUUCGAGCGGAAACUCAACUUCUGCUGGAAGAUCUACAGCUAAGAGAUCAUCAAAUAGGCGUUCAGAUAGAAAAGCUCGAGGAAAUCUCCAAGGGCGAGACCACGCAGAGGCUGGCC ((((.....))))....(((.((((((((((..(((((.(......)))))).((.........(((.....)))..((((..(((....)))..))))))..))).))))))).))).. ( -36.20) >DroSec_CAF1 8894 120 + 1 CCACUUCGAGCGGAAACUCAACUUCUGCUGGACGAUCUACAGCUAAGAGAUCAUCAAAUAGGCGUUCAGAUAGGAAAGCUCGAGGAAAUAUCGAAGGGCGAGACCACGCAGCGGCUGGCC ...(((((((((....).....((((((((((((((((.(......)))))).((.....)).)))))).)))))..))))))))...........(((.((.((.......)))).))) ( -37.90) >DroSim_CAF1 8520 120 + 1 CCACUUCGAGCGGAAACUCAACUUCUGCUGGACGAUCUACAGCUAAGAGAUCAUCAAAUAGGCGUUCAGAUAGGAAAGCUCGAGGAAAUAUCGAAGGGCGAGACCACGCAGAGGCUGGCC ...(((((((((....).....((((((((((((((((.(......)))))).((.....)).)))))).)))))..))))))))...........(((.((.((.......)))).))) ( -37.90) >DroEre_CAF1 8958 120 + 1 CCGCCUCGAGCGGAAACUCAACUUCUGUUGGAUGAUCUUCAGCUACGAGAUCAUCAAAUAGGCAUUCAAAUAGAAAAGCUCGAGGAAAUCUCCAAGGGCGAGACCACGCAGAGGCUGGCC (((((((..(((....(((....((((((.(((((((((.......))))))))).))))))...............((((..(((....)))..)))))))....))).))))).)).. ( -43.30) >DroYak_CAF1 8995 120 + 1 CCGCCUCGAGCGGAAACUCAACUGCUAUUGAACGAUCUUCAGUUAAGAGAUCAUCAAAUAGGCAUUCAAAUAGAAAAGCUCGAGGAAAUCUCCACGGGCGAGACCACACAGAGGCUGGCC (((((((..(.((...(((...((((.((((..((((((.......)))))).))))...)))).............(((((.(((....))).)))))))).)).)...))))).)).. ( -36.40) >consensus CCGCUUCGAGCGGAAACUCAACUUCUGCUGGACGAUCUACAGCUAAGAGAUCAUCAAAUAGGCGUUCAGAUAGAAAAGCUCGAGGAAAUCUCCAAGGGCGAGACCACGCAGAGGCUGGCC ...(((((((((....).....((((((((((((((((.(......)))))).((.....)).)))))).)))))..))))))))...........(((.((.((.......)))).))) (-35.90 = -35.14 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:29 2006