Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,486,289 – 17,486,398 |
Length | 109 |
Max. P | 0.668527 |
Location | 17,486,289 – 17,486,398 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -23.52 |
Energy contribution | -24.36 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -1.45 |
Structure conservation index | 0.82 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17486289 109 - 22224390 CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUUCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU ..((((.(((((((((........((((((((((.......))))))))))((((((((.........)))).)))).....)))))))))........))))...... ( -28.90) >DroSec_CAF1 4178 109 - 1 CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU ..((((.(((((((((........((((((((((.......))))))))))(((((((...........))).)))).....)))))))))........))))...... ( -27.60) >DroSim_CAF1 3960 109 - 1 CUUGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU .((((..(((((((((........((((((((((.......))))))))))(((((((...........))).)))).....)))))))))...))))........... ( -28.40) >DroEre_CAF1 4248 109 - 1 CUGGCAUUCGGCAUUGUGUUUUGUAUCUUGUAUCCUGAAUGGAGUCAGGACGUUUUUGGACUCCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGCCUUUUGU ..((((.(((((((((((...(((((.(((......(((.((((((..((....))..))))))..)))))).)))))..)))))))))))........))))...... ( -33.20) >DroYak_CAF1 4308 109 - 1 CUGGCAUUCGGCUUUGAGUUUUGUGUUUUGAAUCCUGAUUUGAGUCAGGACGUUUUAGGCAUCCUCUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCUUUUGU ...(((((.((....(((....((((((.((((((((((....)))))))..))).)))))).)))..)))))))(((.((((((.......)))))).)))....... ( -25.90) >consensus CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU ..((((.(((((((((................((((((......))))))(((((((((.........)))).)))))....)))))))))........))))...... (-23.52 = -24.36 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:26 2006