Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,479,823 – 17,479,943 |
Length | 120 |
Max. P | 0.590379 |
Location | 17,479,823 – 17,479,943 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.72 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -31.75 |
Energy contribution | -31.62 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -0.63 |
Structure conservation index | 1.00 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17479823 120 + 22224390 AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20) >DroWil_CAF1 11157 120 + 1 AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20) >DroYak_CAF1 9794 120 + 1 AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20) >DroMoj_CAF1 11354 120 + 1 AUGUUAUCUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((..(((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))..))))).. ( -33.80) >DroAna_CAF1 41282 120 + 1 AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20) >DroPer_CAF1 19397 120 + 1 AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20) >consensus AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU (((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. (-31.75 = -31.62 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:15 2006