Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,453,922 – 17,454,027 |
Length | 105 |
Max. P | 0.702625 |
Location | 17,453,922 – 17,454,027 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.51 |
Mean single sequence MFE | -17.32 |
Consensus MFE | -13.33 |
Energy contribution | -12.67 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.77 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17453922 105 - 22224390 UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCGGCCAACUUAUAGCAACUCUCGACCGGCAACAAUAC--------------- ((((..((((...............((((....))))..(((.(((.((.....(((......)))...)).....))).))).....))))..)))).......--------------- ( -15.40) >DroSec_CAF1 19103 105 - 1 UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCAACCAACUUAUAGCAACUCUCGACCGGCAACAAUUC--------------- ((((..((((...............((((....))))..(((.(((........(((......)))..........))).))).....))))..)))).......--------------- ( -15.27) >DroYak_CAF1 18600 120 - 1 UGCUUAUCGAAAACUCAAGCGAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUGCGGCCUCCUUAUCACAACUCUCGACCGGCAACAAUUCCUUACAACAAUUCCU ((((..((((......((((((...((((....))))))))))....................(((((.((...))....)))))...))))..))))...................... ( -21.30) >consensus UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCGGCCAACUUAUAGCAACUCUCGACCGGCAACAAUUC_______________ ((((..((((...............((((....))))..........................(((((............)))))...))))..))))...................... (-13.33 = -12.67 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:58 2006