Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,442,433 – 17,442,551 |
Length | 118 |
Max. P | 0.565682 |
Location | 17,442,433 – 17,442,551 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -21.00 |
Energy contribution | -23.12 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.75 |
Structure conservation index | 0.63 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17442433 118 + 22224390 GUGGUUUGGCUUUUGGCUCUUUAUUGGCAUUGUUGGCUUUAUUGUCGCUGAAAAUUAAGUGACACGAGGAACGGAGGAGUCCUGUCGCUGGGACAAUGCAUUUU--UUUGUUUGCCCAUU .......(((....((((((((.(..((...))..)((((..(((((((........))))))).))))....))))))))..)))..((((.(((.(((....--..)))))))))).. ( -30.60) >DroSec_CAF1 7538 120 + 1 GUGGCUUAUCUUUUGGCUCUUUAUUGCCAUUGUUGGCUUUAUUGUCGCUGGAAAUUAAGUGACACGAGGAACGAAGGAGUCCUGUCGCUGGGACAAUGCAUUUUUUUUUGUUUGCCCAUU (((((...(((((((..(((((...((((....)))).....(((((((........))))))).))))).))))))).....)))))((((.(((.(((........)))))))))).. ( -39.10) >DroEre_CAF1 7348 101 + 1 GUGGUUUGUCUUUUGCCUUUU-------AUUACUGGCUCU-UUGUCACUGGAAAUGAAGUGACACCAGGAACG---GAGUCCUGUCGCUGGGACAAUGCAUUUU--------UGCCCAUU ((((.(((((....(((....-------......)))...-.(((((((........)))))))((((..(((---(....))))..))))))))).(((....--------))))))). ( -30.70) >DroYak_CAF1 7458 108 + 1 GUGGUUUGCCUGUUGGCUUUUUAUUGCCAUUGUUGGCUUU-UUGUCGCUGGAAAUUAAGUGACACGCGAAACG---GAGUCCUGUCGCUGGGACAAUGCAUUUU--------UGCCCAUU (((....(((...((((........)))).....)))...-.(((((((........)))))))))).....(---(.(((((......)))))...(((....--------)))))... ( -33.10) >consensus GUGGUUUGUCUUUUGGCUCUUUAUUGCCAUUGUUGGCUUU_UUGUCGCUGGAAAUUAAGUGACACGAGGAACG___GAGUCCUGUCGCUGGGACAAUGCAUUUU________UGCCCAUU (.(((....((((((..(((((...((((....)))).....(((((((........))))))).))))).)))))).(((((......)))))...................))))... (-21.00 = -23.12 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:47 2006