Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,416,578 – 17,416,685 |
Length | 107 |
Max. P | 0.586909 |
Location | 17,416,578 – 17,416,685 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 85.11 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -16.70 |
Energy contribution | -17.88 |
Covariance contribution | 1.18 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.72 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17416578 107 + 22224390 UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAAGUACACACAUAUGUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA ...(((.((........((((((....)..)))))..((((((....)))))).((((((((((......))))).....)))))))))).((((.......)))). ( -24.80) >DroSec_CAF1 10221 83 + 1 UAGUUGACCAGAAACAAUGAUCGGAAACAUGAUCAAACAUUGAGUGAUCAAUGGGGCAC------------GUACAUAAGUUGCCGGCGGCGACG------------ ..((((.((........((((((....)..)))))..((((((....)))))).(((((------------........).))))...)))))).------------ ( -25.20) >DroSim_CAF1 10302 95 + 1 UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAC------------GUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA ...(((.((........((((((....)..)))))..((((((....)))))).(((((------------........).))))))))).((((.......)))). ( -20.90) >DroEre_CAF1 10207 91 + 1 UAAUUGACCAGAAACAAUAAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA------------GU----AAAUUGCCGGCGGCGAGGAUGGAAGCUUCA ...(((.((........((((((....)..)))))..((((((....)))))).(((((------------..----...)))))))))).((((.......)))). ( -22.20) >DroYak_CAF1 10127 91 + 1 UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA------------GU----AAAUUGCCGGCGGCGAGGAUGGAAGCUUCA ...(((.((........((((((....)..)))))..((((((....)))))).(((((------------..----...)))))))))).((((.......)))). ( -22.30) >consensus UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA____________GUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA ....((.((........((((((....)..)))))..((((((....)))))).))))......................(((((...))))).............. (-16.70 = -17.88 + 1.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:36 2006