Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,400,435 – 17,400,555 |
Length | 120 |
Max. P | 0.753652 |
Location | 17,400,435 – 17,400,555 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -29.01 |
Consensus MFE | -19.49 |
Energy contribution | -20.83 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.13 |
Mean z-score | -2.11 |
Structure conservation index | 0.67 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17400435 120 + 22224390 GCUCUCGCAACAGCUGGUGCGCAAUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACAUUGAGUACAGCUGUGCUUGAAAUAAUUGUAUUAAAUUAUUCAAUUAUUAUUUGAAA ..((..(((.((((((.(((.((((.......((..(..(........)..)..)).......)))).))))))))))))..))((((((((.((......)).))))))))........ ( -26.34) >DroSec_CAF1 115468 120 + 1 GCUCUCGCAAGAGCUGGUGCGCAUUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACUUUGGGUACAGCUGUGCCUGAAAUAAUUGUAUUACAUUAUUCAAUUAUUAUUUAAGA (((((.(((((.(((...((.(((((((....)))))))))..))).))))).)).))).....(..(((((....)))))..)((((((((.((......)).))))))))........ ( -30.40) >DroYak_CAF1 108861 109 + 1 GCAUUCGCAACAGCUGGUGCACAUGAAUAUUCAUUGAUGGCUAGGUAUUUGUUGGUCAAUUAUUUUGAGUACAGCUGUGCUUAAAAUAAUUGUAUUACGUCAUUCAAUU----------- ((((..((....))..))))..((((....))))((((((((((.......)))))((((((((((((((((....)))))))))))))))).....))))).......----------- ( -30.30) >consensus GCUCUCGCAACAGCUGGUGCGCAUUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACUUUGAGUACAGCUGUGCUUGAAAUAAUUGUAUUACAUUAUUCAAUUAUUAUUU_A_A (((((.((((..(((...((.(((((((....)))))))))..)))..)))).)).))).....((((((((....))))))))((((((((.((......)).))))))))........ (-19.49 = -20.83 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:29 2006