Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,387,156 – 17,387,254 |
Length | 98 |
Max. P | 0.680849 |
Location | 17,387,156 – 17,387,254 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -10.77 |
Consensus MFE | -10.52 |
Energy contribution | -10.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.85 |
Structure conservation index | 0.98 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17387156 98 + 22224390 CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCAUUUUAUCUAUACAUACACUUAUUUAGUUUUUGUUUUUUUUUUUUUGUUUGCUAUUUU .(((..(((((....((((....))))...)))))..)))...........(((...(((.....)))...)))........................ ( -12.10) >DroSim_CAF1 76268 87 + 1 CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUACACUUAUUUAGUU-----------UUUUUUUUUUGUUAUUUU .(((..(((((....((((....))))...)))))..))).............................-----------.................. ( -10.30) >DroEre_CAF1 104381 89 + 1 CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUAUAUUUAUUUAGUUGG---UUUUUUUUUUU------UGUGUUU .(((..(((((....((((....))))...)))))..)))...........(((((...............---...........------))))).. ( -10.37) >DroYak_CAF1 96399 82 + 1 CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUAUAUUUAUUUAGUUUU---UUUU-------------CCUUUUU .(((..(((((....((((....))))...)))))..)))...............................---....-------------....... ( -10.30) >consensus CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUACACUUAUUUAGUUUU___UUUU__UUUUU______CUAUUUU .(((..(((((....((((....))))...)))))..))).......................................................... (-10.52 = -10.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:23 2006