Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,365,336 – 17,365,429 |
Length | 93 |
Max. P | 0.951723 |
Location | 17,365,336 – 17,365,429 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 87.40 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -18.11 |
Energy contribution | -18.67 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.88 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17365336 93 + 22224390 ACACGAAAAAAAAAAUG--AAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((............--....(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroSec_CAF1 82415 87 + 1 ACACGAAAAAAA--------AAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((.......--------...(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroSim_CAF1 71987 86 + 1 ACACGAAAA-AA--------AAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((....-..--------...(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroEre_CAF1 83087 95 + 1 ACACGAAAAAAAUAAAGGAAAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((...........(((......((((((......(((.....))).(((....))).)))))).......))).((((....)))).)))). ( -24.12) >DroYak_CAF1 74267 89 + 1 ACACGAAAAAAA------AAAGAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((.......------.....(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroAna_CAF1 84606 77 + 1 AACCGACAAAAA------AAAAAGCAUGUGGCAUCCGCGACAAGAUCGAUUCUACUGAAACCGCAUCCA------CAUCGAC------GGCGUGA ..(((.......------........(((.((....)).)))...(((((.....((......))....------.))))))------))..... ( -11.50) >consensus ACACGAAAAAAA_______AAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((..................(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). (-18.11 = -18.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:16 2006