Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,321,513 – 17,321,657 |
Length | 144 |
Max. P | 0.823717 |
Location | 17,321,513 – 17,321,621 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 84.92 |
Mean single sequence MFE | -13.65 |
Consensus MFE | -11.22 |
Energy contribution | -11.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.82 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17321513 108 - 22224390 AUCAUAACAAAUCCUCUGUUUCAUUAGGAUUUGUUUCACGUUUCGAUUUUUUUUUGUUUCUCAUUUUCAUACAUGAAGCAUGUUUCACUCACUGGCUGGCCUUUGGUU .....((((((((((..........))))))))))...................((((((..............))))))........(((..((....))..))).. ( -16.14) >DroSec_CAF1 38581 89 - 1 AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC-------------UUUGCUU .((((((((((((((..........)))))))))).........((.....------.))............))))((((........-------------..)))). ( -12.40) >DroSim_CAF1 28473 89 - 1 AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC-------------UUUGCUU .((((((((((((((..........)))))))))).........((.....------.))............))))((((........-------------..)))). ( -12.40) >consensus AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU______UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC_____________UUUGCUU .....((((((((((..........))))))))))......................................(((((....)))))..................... (-11.22 = -11.00 + -0.22)
Location | 17,321,541 – 17,321,657 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -16.69 |
Energy contribution | -16.80 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.63 |
Structure conservation index | 0.81 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17321541 116 - 22224390 G---CUUUUCAUGAAACCACAACAAAUGUGCAACUAAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGAUUUGUUUCACGUUUCGAUUUUUUUUUGUUUCUCAUUUUCAUACAUGAAGCA (---((((..((((((.((((.....))))(((..(((((((..((((((((((..........)))))))))).........)))))))..)))........))))))....))))). ( -23.60) >DroSec_CAF1 38596 113 - 1 GGUGCUUUUCAUGAAACCACAUCAAAUGUCCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCA ..((((((..((((((.......((((((...............((((((((((..........))))))))))..)))))).((.....------.))....))))))....)))))) ( -17.53) >DroSim_CAF1 28488 110 - 1 G---CUUUUCAUGAAACCACAGCAAAUGUGCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCA (---((((..((((((.....(.(((((((..............((((((((((..........)))))))))).))))))))((.....------.))....))))))....))))). ( -20.96) >consensus G___CUUUUCAUGAAACCACAACAAAUGUGCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU______UUCUUAUUUUCAUACAUGAAGCA ......(((((((....((((.....))))......((((((..((((((((((..........)))))))))).........)))))).....................))))))).. (-16.69 = -16.80 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:01 2006