Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,916,598 – 1,916,691 |
Length | 93 |
Max. P | 0.745965 |
Location | 1,916,598 – 1,916,691 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -40.84 |
Consensus MFE | -34.92 |
Energy contribution | -35.36 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.86 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1916598 93 + 22224390 CCACUAUUGCGUCUAUCGAGGGCGAAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGAACACGCUCCUU (((((..(((.........((((......)).))....(((.(((((.....))))))))..)))...)))))(((((((....))))))).. ( -37.30) >DroSec_CAF1 478 93 + 1 CCACUAGCGCGUCUAUCGAGGGUGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGAGCAUCCAGGGGGGGGUGUGGACACGCUCCUU .....((((.((((......(((((....))))).((((((.(((((.....)))))(((.....)))......)))))))))).)))).... ( -39.90) >DroSim_CAF1 493 93 + 1 CCACUAGCGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGGACACGCUCCUU (((((.((((((((.....)))))).)).((.((....(((.(((((.....))))))))))))....)))))(((((((....))))))).. ( -42.80) >DroEre_CAF1 479 93 + 1 CCACUAAUGCGUCUAUCGAGGGCGCGGCAGCACCGGCAUCCAGGAGCACUGAACUCCGGAUGGCGUCCAGUGGGGGGUGUGGACUCGCUCCUU (((((..(((((((.....))))))).......((.(((((.((((.......))))))))).))...)))))((((((......)))))).. ( -39.70) >DroYak_CAF1 510 93 + 1 CCACUAAUGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAUGGCGUCCAGUGGGGGGUGUGGACUCGCUCCUU (((((..(((((((.....))))))).......((.(((((.(((((.....)))))))))).))...)))))((((((......)))))).. ( -44.50) >consensus CCACUAAUGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGGACACGCUCCUU (((((...((((((.....)))))).((.((....)).(((.(((((.....))))))))..))....)))))((((((......)))))).. (-34.92 = -35.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:16 2006