Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 315,232 – 315,331 |
Length | 99 |
Max. P | 0.658092 |
Location | 315,232 – 315,331 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.51 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -20.16 |
Energy contribution | -19.84 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 315232 99 + 22224390 UUCCUUAAUUU-UUUGGCUAAUUUU-AUUUAGUUUAUAGUUAGAAAGAGUUACAUAUCUGUACACCGGUCACUUGUAACUCGUUCACGAUCCGAUGGGGGG .((((((....-.((((((((....-..))))).........(((.((((((((...(((.....))).....)))))))).))).))).....)))))). ( -21.70) >DroSec_CAF1 58191 94 + 1 UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG-------UAACUCUUUCACGAUCCGAUGGGGGG .((((((.......(((((....(((((...))))).)))))(((((((((((..............)-------)))))))))).........)))))). ( -25.04) >DroSim_CAF1 78803 94 + 1 UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG-------UAACUCUUUCACGAUCCGAUGGGGGG .((((((.......(((((....(((((...))))).)))))(((((((((((..............)-------)))))))))).........)))))). ( -25.04) >consensus UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG_______UAACUCUUUCACGAUCCGAUGGGGGG .((((((.......(((((..................)))))((((((((((.....(((.....))).......)))))))))).........)))))). (-20.16 = -19.84 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:57 2006