Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,255,146 – 17,255,266 |
Length | 120 |
Max. P | 0.614126 |
Location | 17,255,146 – 17,255,266 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.31 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -16.69 |
Energy contribution | -18.75 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.53 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17255146 120 + 22224390 UUCCUCAUCGGAUGUUGCAGAUUCUUCGCCGGAUUCGCCGGAAUCCUCAAUAUCUGAUGACUUUUUGGACUCCUUAACGGCUGAACUCGGUUUUACCCUCGGAGAUCCCCCUCCUGAGUU ....(((((((((((((..((((((..((.......)).))))))..))))))))))))).......(((((......(((((....)))))........((((......)))).))))) ( -36.40) >DroSec_CAF1 100645 111 + 1 UUCCUUAUCGGAUGUUGCAGAUUCUUCGCCGGAUU---------CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACUGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU ....(((((((((((((..((.(((.....))).)---------)..))))))))))))).....((((......(((((......)))))..))))((((((........))).))).. ( -31.70) >DroSim_CAF1 104119 111 + 1 UUCCUUAUCGGAUGUUGCAGAUUCUUCGCCGGAUU---------CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACAGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU ....(((((((((((((..((.(((.....))).)---------)..)))))))))))))..((..((((((((....))))).....((.(((((....))))).))...)))..)).. ( -32.90) >DroEre_CAF1 106726 120 + 1 UUCGUCAUCGGAUGCAGCGGAUUCUUCGCCGGAUUCAGCUGACUCCUCACGAUCUGAUGAUUUUUGCGGCCUUCUCCCAUUUAAACUGACUUUUCCCCUCGAAGAUCCCUCUCCUGACUU ...((((..(((.(.((.((((.(((((..(((.((((............((((....))))..((.((......))))......))))....)))...))))))))))))))))))).. ( -26.00) >consensus UUCCUCAUCGGAUGUUGCAGAUUCUUCGCCGGAUU_________CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACUGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU .((((((((((((((((..((....))...(((.((....)).))).)))))))))))))......)))............................(((((((......)))).))).. (-16.69 = -18.75 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:26 2006