Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,908,494 – 1,908,653 |
Length | 159 |
Max. P | 0.893390 |
Location | 1,908,494 – 1,908,613 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -29.54 |
Energy contribution | -29.54 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.99 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1908494 119 - 22224390 GGUAAUUUGCGUGUGGAAUGGGCGCUUUGUUUACAUUGUUCCUAUUCGGUGUUGUUUCUUAACCGCCCUUCCCGCCCCAUUCCGCCCCAAUCCACUCGACUCUUUCGCUCUUUCGUCGA ((....(((.(.((((((((((.((..((....))............(((((((.....))).))))......)))))))))))).)))).))..(((((..............))))) ( -30.84) >DroSec_CAF1 3921 119 - 1 GGUAAUUUGCCUGUGGAAUGGGCGCUUUGUUUACAUUGUUCCUAUUCGGUGUUGUUUCUUAACCGCCCUUCCCGCCCCAUUCCGCCCCAAUCCACUCGACUCUUUCGCUCUUUCGUCGA ((....(((...((((((((((.((..((....))............(((((((.....))).))))......))))))))))))..))).))..(((((..............))))) ( -29.54) >DroSim_CAF1 4184 119 - 1 GGUAAUUUGCCUGUGGAAUGGGCGCUUUGUUUACAUUGUUCCUAUUCGGUGUUGUUUCUUAACCGCCCUUCCCGCCCCAUUCCGCCCCAAUCCACUCGACUCUUUCGCUCUUUCGUCGA ((....(((...((((((((((.((..((....))............(((((((.....))).))))......))))))))))))..))).))..(((((..............))))) ( -29.54) >consensus GGUAAUUUGCCUGUGGAAUGGGCGCUUUGUUUACAUUGUUCCUAUUCGGUGUUGUUUCUUAACCGCCCUUCCCGCCCCAUUCCGCCCCAAUCCACUCGACUCUUUCGCUCUUUCGUCGA ((....(((...((((((((((.((..((....))............(((((((.....))).))))......))))))))))))..))).))..(((((..............))))) (-29.54 = -29.54 + -0.00)
Location | 1,908,534 – 1,908,653 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -23.92 |
Energy contribution | -23.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.85 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1908534 119 + 22224390 UGG-GGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACACGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA .((-(((((((((((((.((...........((.....)).....((....)))).))))).))))...))).((((....)))).)))(((......)))..((((((....)))))). ( -28.10) >DroSec_CAF1 3961 119 + 1 UGG-GGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACAGGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA .((-((.((((.(((((.((...........((.....)).....((....)))).))))).)))).).((.......))......)))(((......)))..((((((....)))))). ( -28.10) >DroSim_CAF1 4224 119 + 1 UGG-GGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACAGGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA .((-((.((((.(((((.((...........((.....)).....((....)))).))))).)))).).((.......))......)))(((......)))..((((((....)))))). ( -28.10) >DroEre_CAF1 1869 119 + 1 UGG-GGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACAGGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA .((-((.((((.(((((.((...........((.....)).....((....)))).))))).)))).).((.......))......)))(((......)))..((((((....)))))). ( -28.10) >DroYak_CAF1 4552 120 + 1 UGGGGGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACAGGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA ..((((.((((.(((((.((...........((.....)).....((....)))).))))).)))).).((.......))......)))(((......)))..((((((....)))))). ( -28.10) >consensus UGG_GGCGGGAAGGGCGGUUAAGAAACAACACCGAAUAGGAACAAUGUAAACAAAGCGCCCAUUCCACAGGCAAAUUACCAAAUUACCCGAUGAUGAAGUCAAUUGUUGUAUACAAUAAA (((..((.(((((((((.((...........((.....)).....((....)))).))))).))))....))......)))........(((......)))..((((((....)))))). (-23.92 = -23.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:09 2006