Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,201,053 – 17,201,151 |
Length | 98 |
Max. P | 0.548658 |
Location | 17,201,053 – 17,201,151 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.09 |
Mean single sequence MFE | -28.50 |
Consensus MFE | -17.36 |
Energy contribution | -18.24 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.61 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17201053 98 - 22224390 ------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUUCCCGCUCAAAAUGUCUACAUUAGGGACAUUC------GCAUUCCGGCAACAGAAAGCGGGCGAAA ------..(((((((((((.....))))....)))))))........(((((..(((((((.......))))))).------((.(((.(....).))).)))))))... ( -32.90) >DroSec_CAF1 46571 104 - 1 ------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUCGCAUUCGCAUUCCGCCAACAGAAAGCGGGCGAAA ------..(((((((((((.....))))....)))))))..((((((.......((((....)))).))))))(((((...(((.(((........))).))).))))). ( -32.30) >DroSim_CAF1 51248 104 - 1 ------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUCGCAUUCGCAUUCCGCCAACAGAAAGCGGGCGAAA ------..(((((((((((.....))))....)))))))..((((((.......((((....)))).))))))(((((...(((.(((........))).))).))))). ( -32.30) >DroEre_CAF1 53760 98 - 1 ------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGCUUGUCUACGCUCAAAAUGUCUACAUUAGGGAAAUUC------GCCAGCCACCAGCAGAAAGCGGGCGAAG ------(((((((((((((.....))))....)))))))))........(((..((((....)))).)))...(((------(((.((............)).)))))). ( -29.00) >DroYak_CAF1 53098 98 - 1 ------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCUCCGCUCAAAAUGUCUACAUUAGGGAAACUC------GCAUUCCGCCAACAGAAAACGGGUGAAA ------..(((((((((((.....))))....)))))))........(((((..((((....))))..((((....------...)))).............)))))... ( -22.70) >DroPer_CAF1 64542 85 - 1 CGUCCGACCCUAAGUUGCUUAUUUAGCAAAUUGGUUGGGAUCGUCCCGGUACAAAAUGUCUACAUUAA-------------------------ACGCGGAGUGGGAGCAA ..(((((((.....(((((.....)))))...))))))).(((..(((((....((((....))))..-------------------------)).)))..)))...... ( -21.80) >consensus ______GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUC______GCAUUCCGCCAACAGAAAGCGGGCGAAA ........(((((((((((.....))))....)))))))....((((((((...((((....)))).((((..............))))..........)))))).)).. (-17.36 = -18.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:59 2006