Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,109,385 – 17,109,492 |
Length | 107 |
Max. P | 0.956595 |
Location | 17,109,385 – 17,109,492 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -26.53 |
Energy contribution | -26.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.25 |
Mean z-score | -1.54 |
Structure conservation index | 0.78 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17109385 107 + 22224390 UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAC-CCGGA .........--...((((..((.((((((((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).)))))))))....))))).))-.)))) ( -39.00) >DroPse_CAF1 5025 92 + 1 --GCUGUUC--CGAUCC------ACUGUCUUGGGUGAAUAACUUUGUCGAUCGCCUGAACUUGCAUCAGGCUGCCAGCGACGUUCGCCCAGGCAACAUCGUC-------- --.......--((((..------..(((((.((((((((......((((...((((((.......))))))......)))))))))))))))))..))))..-------- ( -31.10) >DroEre_CAF1 3749 108 + 1 UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAACCUCGA ...(((..(--(((....))))..))).(((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).))))))))).....(((.......))) ( -36.90) >DroWil_CAF1 4565 96 + 1 UGUCGAAUGGUUGAUG------GUUCGUCUUGGGUGAACAACUUUGGCAAUAGCUUGAACUCACUUCAGGCUGCCAACAGCAUUCGGCCGGAUAACAUCGUA-------- .((((((((.(((...------((((..(...)..))))....((((((...(((((((.....))))))))))))))))))))))))..............-------- ( -30.40) >DroYak_CAF1 3904 106 + 1 UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAC--CCGA ...(((..(--(((....))))..))).(((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).)))))))))............--.... ( -36.70) >DroPer_CAF1 5043 92 + 1 --GCUGUUC--CGAUCC------ACUGUCUUGGGUGAAUAACUUUGUCGAUCGCCUGAACUUGCAUCAGGCUGCCAGCGACGUUCGCCCAGGCAACAUCGUC-------- --.......--((((..------..(((((.((((((((......((((...((((((.......))))))......)))))))))))))))))..))))..-------- ( -31.10) >consensus UCUCCAAUG__CGAUCC_____CAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCACUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUC________ ..........................((((.((((((....(.((((((...(((((((.....))))))))))))).)....))))))))))................. (-26.53 = -26.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:38 2006