Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,087,402 – 17,087,494 |
Length | 92 |
Max. P | 0.860847 |
Location | 17,087,402 – 17,087,494 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.01 |
Mean single sequence MFE | -15.35 |
Consensus MFE | -11.90 |
Energy contribution | -13.30 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.78 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17087402 92 + 22224390 GUAGAAUCUGGAAAGAAAACCAAAAAAAAAAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACACACAC----- ((((..(((((((.......(((((.((((....((((((.........))).)))....)))).)))))))))))).))))..........----- ( -11.51) >DroSec_CAF1 94163 86 + 1 GUAGAAUCUGGAAAGAAAAACAAAAA--AAAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACA----CAC----- ((((..(((((((...(((((((((.--......((((((.........))).)))....))))))))).))))))).))))...----...----- ( -16.80) >DroSim_CAF1 84858 87 + 1 GUAGAAUCUGGAAAGAAAAACAAAAA---AAAAAAUGGGUAAUAAUAAAACCGCACAAAAUUUUGUUUUGUUUCGGAGUUGCACACA--CAC----- ((((..(((((((...(((((((((.---......(((............))).......))))))))).))))))).)))).....--...----- ( -16.14) >DroEre_CAF1 85721 88 + 1 GUAGAAUCUGGAAAGAAACCCACAA-------AAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACA--CACACACA ((((..(((((((.((((((((...-------...)))))............(((........)))))).))))))).)))).....--........ ( -14.70) >DroYak_CAF1 89888 84 + 1 GUAGAAUCUGGAAAGAAAAACACAA------AAAAUGGGUAAUAAUAAAACCGCAUGAAAUUUGGUUUUGUUUCGGAGUUGCACACA--CAC----- ((((..(((((((...(((((.(((------(..((((((.........))).)))....))))))))).))))))).)))).....--...----- ( -17.60) >consensus GUAGAAUCUGGAAAGAAAAACAAAAA___AAAAAAUGGGUAAUAAUAAAACCGCAUAAAAUUUUGUUUUGUUUCGGAGUUGCACACA__CAC_____ ((((..(((((((...(((((((((.........((((((.........))).)))....))))))))).))))))).))))............... (-11.90 = -13.30 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:28 2006