Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,069,096 – 17,069,187 |
Length | 91 |
Max. P | 0.839304 |
Location | 17,069,096 – 17,069,187 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 68.87 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -16.33 |
Energy contribution | -18.03 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.17 |
Mean z-score | -1.66 |
Structure conservation index | 0.51 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17069096 91 - 22224390 AUCUGCGGGAAUCUGCUGGAAUCUGCCGGAAUCUG-------CCACGGCAGCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC ......(((((((((.(((...((((((.......-------...))))))))))))).(((((((((....)))))))))...--------------...)))))...... ( -34.60) >DroPse_CAF1 83759 95 - 1 CCCAGCACUCAACAACCAGC---------GACCCG-------CCAAUCCAU-UCCGGAAUUCUUGGAAGUACUUCUCGGGCAGCGAUCCCGAAGCGAAGAUUUCCCAUCGGC ....((............))---------.....(-------((..(((..-...)))......((((((.(((((((((.......)))))...))))))))))....))) ( -22.40) >DroSec_CAF1 68570 78 - 1 AUCUGCGGGAAUCUGCUGGAAUC--------------------CACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC ......(((((...(((((((((--------------------(.((.......)))))))))(((((....)))))...))).--------------...)))))...... ( -28.90) >DroSim_CAF1 59899 78 - 1 AUCUGCGGGAAUCUGCUGGAAUC--------------------CACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC--------------AAUUUCCCAUUGAC ......(((((...(((((((((--------------------(.((.......)))))))))(((((....)))))...))).--------------...)))))...... ( -28.90) >DroEre_CAF1 69022 96 - 1 AUCUGCGGGAAUCUGCCGGAAUCCA-CGGCAUCC-ACGGCAUCCGCGGCAUCCGCGGGAUUCUGGGAAGCACUUAACGGGGGCC--------------AAUUUCCCAUUGAC ......(((((..(((((.......-)))))...-..(((.(((((((...))))))).(((((..((....))..))))))))--------------...)))))...... ( -36.00) >DroYak_CAF1 72528 98 - 1 AUCUGCGGGAAUUUGCUGGAAUCUGUCGGAAUCUGGCGGAAUUCACGGCAUCUACGGGAUUCUGGGAAGCACUUCCCGGAGGCC--------------AAUUUCCCAUUGAC ......(((((..((((((((((((((((...))))))).)))).)))))......((.(((((((((....))))))))).))--------------...)))))...... ( -40.60) >consensus AUCUGCGGGAAUCUGCUGGAAUC_______AUC_________CCACGGCAUCCACGGGAUUCUGGGAAGCACUUCCCGGGGGCC______________AAUUUCCCAUUGAC .((...(((((..(((((...........................)))))......((.(((((((((....))))))))).)).................)))))...)). (-16.33 = -18.03 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:23 2006