Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,039,905 – 17,039,997 |
Length | 92 |
Max. P | 0.532703 |
Location | 17,039,905 – 17,039,997 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.65 |
Mean single sequence MFE | -29.46 |
Consensus MFE | -19.68 |
Energy contribution | -20.08 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.64 |
Structure conservation index | 0.67 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17039905 92 - 22224390 GCGUUACGGAUUCGCAAAAGGUUCGGGUAAUUCCCCAAUUAGCACUGAGGGAAAUAUUUGGAGCUGUUAACGUGAUAUGAUCUGAAACGCAG (((((.(((((((((...((.((((((((.(((((((........)).))))).)))))))).))......))))....))))).))))).. ( -30.40) >DroSec_CAF1 39742 92 - 1 GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGGGAAAUAUUUGGAGCUGUUGACGUGAUAUGAUCUGUAACGCAG (((((((((((((((((..((((((((((.(((((((........)).))))).))))).))))).))).))......)))))))))))).. ( -36.20) >DroSim_CAF1 32882 92 - 1 GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUGGAGCUGUUGACGUGAUAUGAUCUGUAACGCAG (((((((((((((((((..((((((((......))).....((.....))..........))))).))).))......)))))))))))).. ( -32.70) >DroEre_CAF1 39995 92 - 1 GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGAGAAAUAUUUCGAUCUGCAAAUGUGAUGUGAUCUGAAACGCAG (((((.(((((.((((........(((......))).....(((.(((((......)))))...)))........))))))))).))))).. ( -26.00) >DroYak_CAF1 41673 92 - 1 GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUUGAAUUGUUUAUGUGUAAUGAUAUUAAACGCAG (((((..((.(((....)))..))(((......))).....(((((((((((...........))))))).))))..........))))).. ( -22.00) >consensus GCGUUACGGAUUCGCAAGAAGCUCGGGUAAUUCCCCAAUUAGCACUGAGCGAAAUAUUUGGAGCUGUUAACGUGAUAUGAUCUGAAACGCAG (((((.(((((((((....((((((((......)))..(((....)))............)))))......)))....)))))).))))).. (-19.68 = -20.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:17 2006