Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,003,050 – 17,003,145 |
Length | 95 |
Max. P | 0.742460 |
Location | 17,003,050 – 17,003,145 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -21.43 |
Consensus MFE | -19.53 |
Energy contribution | -19.87 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.91 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17003050 95 - 22224390 AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU ...((((...((....(((((((((.....)))))))))....))...))))........................................... ( -21.80) >DroSec_CAF1 8044 95 - 1 AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU ...((((...((....(((((((((.....)))))))))....))...))))........................................... ( -21.80) >DroYak_CAF1 8688 95 - 1 AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGGCAAACACUCGCAAAAAAUAAGUAAAUAAAAAAGAUACAUUCCGAU ......(((((((...(((((((((.....))))))))).)))......((........)).........))))..................... ( -20.70) >consensus AUAUGGUUACGGUACGGGUUUGGGUAGUUGACCCAAGCCAACCCCUUUGCCAAACACUCGCAAAAAAUAAACAAACAACAAAGAUACAUUCCGAU ...((((...((....(((((((((.....)))))))))....))...))))........................................... (-19.53 = -19.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:05 2006