Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,985,945 – 16,986,064 |
Length | 119 |
Max. P | 0.568690 |
Location | 16,985,945 – 16,986,064 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.92 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -32.06 |
Energy contribution | -32.34 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.54 |
Structure conservation index | 0.76 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16985945 119 - 22224390 AUGUGACCAGCAAAGCGGACAUUAGCAAGGCGGCCGAUCCCUUCAAGGAUCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCUCAAGCUGGAAGCAGGCGUAUGUGGUCAGAAGC .(.((((((.((..((.(...(((((.((((.((((((((......))))).......((...))..............))).))))...)))))...)..))...)))))))).)... ( -35.10) >DroSec_CAF1 4050 119 - 1 AUGUGACCAGCAAAGUGGACAUUGGCAAGGUGGCGGAUCCAUUCAAGGACCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAACAGGCGUAUGUGGUCAUAAGC .((((((((.((..((.....(((((...((.(.((.(((......))))).).))..(((((.(..(........)..)))))).)))))(((....)))))...))))))))))... ( -41.10) >DroSim_CAF1 5411 119 - 1 AUGUGACCAGCAAAGUGGACAUUGGCAAGGUGGCGGAUCCAUUCAAGGACCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAACAGGCGUAUGUGGUCAUAAGC .((((((((.((..((.....(((((...((.(.((.(((......))))).).))..(((((.(..(........)..)))))).)))))(((....)))))...))))))))))... ( -41.10) >DroEre_CAF1 2219 119 - 1 AUGUGACCAGCAAGCUGGACAUUAGCAAGGCGGCAGAUCCCUUCAAGGAUCUCGACGAGCCGCGCAUCAAGGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGCAUGUGGCCGGAAAC .(((..(((((..((((.....))))..((((((..((((((((...((((.((......)).).))).....))))).))).)))))).)))))..)))(((.......)))(....) ( -45.10) >DroYak_CAF1 2354 119 - 1 AUGUGACCAGCAAGCUGGACAUCAGCAAGGCGGCAGAUCCCUUCAAGGAUCUGGACGAGCCGCGCAUCAAGGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGUAUGUGGCCGGUAAC .(((..(((((..((((.....))))..((((.(((((((......))))))).....(((((.(..(........)..)))))))))).)))))..)))(((.......)))...... ( -47.70) >consensus AUGUGACCAGCAAAGUGGACAUUAGCAAGGCGGCAGAUCCCUUCAAGGAUCUCGACAAGCCACGCAUCAAAGAGAAGGAGGUGGCCGCCAGCUGGAAGCAGGCGUAUGUGGUCAGAAGC .(((..(((((...((((.((((.((...(((((((((((......))))))......))))))).((.....))....)))).))))..)))))..)))(((.......)))...... (-32.06 = -32.34 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:00 2006