Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,979,867 – 16,979,974 |
Length | 107 |
Max. P | 0.748433 |
Location | 16,979,867 – 16,979,974 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.45 |
Mean single sequence MFE | -25.19 |
Consensus MFE | -18.06 |
Energy contribution | -16.79 |
Covariance contribution | -1.27 |
Combinations/Pair | 1.38 |
Mean z-score | -1.29 |
Structure conservation index | 0.72 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16979867 107 - 22224390 CAAAACUAAAACUGCAGCGUUGAUCUC-UGCAGCGUUGUGGCAUUCAAUUGGACCACAGGAAAUCCCAUGGUUAGCUAUUCCUCUUAAGGGCAUGGCCUCAAAAAUGC .............(((((((((.....-..))))))))).(((((...((((((((..((....))..))))).(((((((((....)))).)))))..))).))))) ( -29.50) >DroVir_CAF1 6853 107 - 1 CAAAACUAAAACCACAUCAGUGCUUCG-CACGCUGGCGUGGUAUUCAACUGGACUACAUCGAAAUCCAUGGUUAACUUAUCCUCUUAAGGGCAUUGGCUCGUAGAUGC ...(((((..(((((..(((((.....-..)))))..))))).......((((...........))))))))).........(((...((((....))))..)))... ( -24.70) >DroPse_CAF1 6562 108 - 1 CUAAACUAAAACUGCAGCGAUGAUUCCACACGUCGUUGUGGUAUUCAAUAGGACCAAACCAAAGCCCAUGAUUUGCUAUUCCUCUUAAGGGCAUUGGCUUGAAUAUGC ..........((..((((((((........))))))))..))............(((.((((.((((.(((.............))).)))).)))).)))....... ( -28.62) >DroSim_CAF1 6801 106 - 1 CAAAACUAAAACUGCAGCGUAGAUUUC-UACAGCGUUGUGGUAUUCAAUUGGACCACAU-AAACCUCAUGGUUAGCUAUUCCUCUUAAGGGCAUAGCCUCAAAAAUGC .............(((((((((....)-))).))..((((((..........)))))).-.((((....)))).(((((((((....)))).)))))........))) ( -24.20) >DroMoj_CAF1 6426 107 - 1 CACAACUAAAACCGCAUCAGUGACUCG-CACGCUGCUGUGGUAUUCAAUUGGACUACAUUGAACCCCAUGGUUAACUAUUCCUCUUAAGGGCAUUGGCUAAAAGAUGC .............(((((.(((.....-)))((((((((((..((((((.(.....)))))))..))))))).......((((....))))....))).....))))) ( -25.80) >DroAna_CAF1 9830 107 - 1 CAAAACUAAAACUGCAGUGUUGAUUCU-UACAACAUUGUGGUAUUCAAUUGGACCAAAACGAACCCCAUGAUUUACUAUUCCUCUUAAGGGCAUCAUCUUGAAAAUGC ..........((..((((((((.....-..))))))))..)).((((((((........)))..(((.(((.............))).))).......)))))..... ( -18.32) >consensus CAAAACUAAAACUGCAGCGUUGAUUCC_CACACCGUUGUGGUAUUCAAUUGGACCACAUCAAACCCCAUGGUUAACUAUUCCUCUUAAGGGCAUUGGCUCAAAAAUGC ...(((((..((((((((((((........))))))))))))........((.............)).))))).......(((....)))((((..........)))) (-18.06 = -16.79 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:53 2006