Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,904,479 – 1,904,585 |
Length | 106 |
Max. P | 0.517006 |
Location | 1,904,479 – 1,904,585 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.68 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -29.46 |
Energy contribution | -29.77 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.14 |
Structure conservation index | 0.89 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1904479 106 + 22224390 UGACCACCACGUUUUCCGCUACCGA-------UCUCCGAUCACUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU .................(((...((-------(((((((((......-------....))))(((((.(((....((((((....))))))))).))))).....))))).)).)))... ( -35.10) >DroSec_CAF1 1 82 + 1 ------------------------A-------UCUCCGAUCUCUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU ------------------------.-------.((((((((......-------....))))(((((.(((....((((((....))))))))).))))).....))))((....))... ( -32.10) >DroSim_CAF1 171 106 + 1 UGACCACCACGUUUUCCGCUACCGA-------UCUCCGAUCACUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCUGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU .................(((...((-------(((((((((......-------....))))(((((.(((.(((...(((....))))))))).))))).....))))).)).)))... ( -34.00) >DroYak_CAF1 225 120 + 1 UGACCACCACGUUUACCGCUACCGAACUCCGAACUCCGAUCACUGAACACCGAACACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUUUGGUACAUGGGAGGCUCAGGCUCU (((((.((.(((.((((....................((((..((.........))..))))(((((.((((............)))).)))))...)))).))))).)).)))...... ( -30.50) >consensus UGACCACCACGUUUUCCGCUACCGA_______UCUCCGAUCACUGAA_______CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU .................................((((((((..((.........))..))))(((((.(((....((((((....))))))))).))))).....))))((....))... (-29.46 = -29.77 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:00 2006