Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,943,382 – 16,943,475 |
Length | 93 |
Max. P | 0.829528 |
Location | 16,943,382 – 16,943,475 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -18.39 |
Energy contribution | -17.07 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.26 |
Mean z-score | -1.74 |
Structure conservation index | 0.77 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16943382 93 - 22224390 ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA---AUCUCUAGCUUAACUCGGUUGGC---AA----------- ....((((((((((((....))))))....))))))...((((((.(((((...(((((........)---))))...)))))...))).))).---..----------- ( -20.70) >DroSec_CAF1 26307 104 - 1 ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA---AUUUCUAGCUUAACUCGGCUGGC---UAGUUUAAACGGG ....((((((((((((....))))))....))))))...((.((((......))))........((((---(...((((((..........)))---))).))))).)). ( -23.60) >DroEre_CAF1 13028 110 - 1 ACUCGCAGGCAUUAUAAUACUGUAAUUACAGUCCACUUUCCACUGUUGAGCCGCGGAUUUUCUUUUUCACUAUUUUCAGCUUUACUCAGCUGGUCUUUAGCUGAAAUGGA ..((((.(((.........((((....))))((.((........)).)))))))))....(((.((((((((...((((((......))))))....))).))))).))) ( -26.90) >consensus ACUCGUAGGCAUUACAAUACUGUAAUUACAGUCUACUUUCCACUGCUGAGCCGCGGAUUUUCUUUUUA___AUUUCUAGCUUAACUCGGCUGGC___UAG_U_AAA_GG_ ..((((.(((((((((....))))))..((((.........))))....)))))))...................((((((......))))))................. (-18.39 = -17.07 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:26 2006