Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,886,599 – 16,886,692 |
Length | 93 |
Max. P | 0.751462 |
Location | 16,886,599 – 16,886,692 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 85.06 |
Mean single sequence MFE | -24.56 |
Consensus MFE | -17.02 |
Energy contribution | -17.06 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -2.01 |
Structure conservation index | 0.69 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16886599 93 + 22224390 CUACC-----GAGCACCAAGUAGCUACAACCAAGUAGCAAGUACAAAGCAGCAAGUCUGUAAAAGAUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU .....-----(((((.(.....(((((......))))).........((((.....))))....).)))-----))((((..((.......)).))))..... ( -22.30) >DroSec_CAF1 85867 92 + 1 CUACC-----AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC-AAGCUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU .....-----.(((.(((....(((((......)))))..((....((((((.........-..)))))-----)......))........))).)))..... ( -23.10) >DroSim_CAF1 66208 92 + 1 CUACC-----AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC-AAGCUGC-----UCAGCCAGCAAAAAGGAUGGGGCUAAAUU .....-----.(((.(((....(((((......)))))..((....((((((.........-..)))))-----)......))........))).)))..... ( -23.10) >DroEre_CAF1 70456 97 + 1 CUACC-----AAGUACCAAGUGGCUACAAGCAAGUGGCAAGUACCAAGCAGCAAGUCUGCC-AAGCUGCUUUGCUCAGCGAGCAAAAUGGAUGGGGCUAAAUU .....-----.((..(((....(((((......))))).....(((.(((((.........-..)))))(((((((...))))))).))).)))..))..... ( -29.20) >DroYak_CAF1 72184 90 + 1 CUACCAAGCCAAGUACCAAGUAGCUACAAGCAAGUAG-------CAAGCAGCAAGUCUGCC-CAGCUGC-----UGAGCGAGCAAAGAGGAUGGGGCCAAAUU .......(((..((.((.....(((....((.(((((-------(..((((.....)))).-..)))))-----)..)).))).....))))..)))...... ( -25.10) >consensus CUACC_____AAGCACCAAGUAGCUACAACCAAGUAGCAAGCACAAAGCAGCAAGUCUGCC_AAGCUGC_____UCAGCCAGCAAAAAGGAUGGGGCUAAAUU ...........(((.(((....(((((......))))).........((((.....))))....(((((........)).)))........))).)))..... (-17.02 = -17.06 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:54 2006