Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,828,581 – 16,828,678 |
Length | 97 |
Max. P | 0.619125 |
Location | 16,828,581 – 16,828,678 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 84.02 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -19.32 |
Energy contribution | -20.36 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.70 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16828581 97 - 22224390 -----------CCUGACCCCUGUGCACUUGGGCUCAAGCUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGACUUCAGCGCAGAUAGUAUAAGUUCAAAGCCA -----------...................((((((((.(((....((.........))..))))))))..(((((((((..((.......))..)))))))))))). ( -21.50) >DroSec_CAF1 26166 97 - 1 -----------CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGUUAGUAUAAGUUCAAAACCA -----------.((((((((((......)))).((((((.((....((.........))..)))))))).....((((....))))))))))................ ( -27.20) >DroSim_CAF1 11614 97 - 1 -----------CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGUUAGUAUAAGUUCAAAACCA -----------.((((((((((......)))).((((((.((....((.........))..)))))))).....((((....))))))))))................ ( -27.20) >DroEre_CAF1 14247 97 - 1 -----------CCUGACCCCCAUCCACUUGGCCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCGGCCCGGAUAACACAAGUUCAAAACCA -----------..............(((((...((((((.((....((.........))..))))))))(((((((((....)))))))))...)))))......... ( -27.90) >DroYak_CAF1 11328 108 - 1 UAUAAUUUCAAUUUAAAUGCCAGCUACUGGCGCUCAAGUUGAAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCGGCCCGGAUAAUAUAAGUUGAAAACCG .....((((((((((...(((((...)))))..((((((.(.....((.........))..).))))))(((((((((....)))))))))...)))))))))).... ( -34.60) >consensus ___________CCUGACCCCCGUGCACUUGGGCUCAAGUUGGAACAGCAACACGACAGCAGCCACUUGAUAUUUGGGCUUCAGCCCGGAUAGUAUAAGUUCAAAACCA ......................((.(((((...(((((.(((....((.........))..))))))))(((((((((....)))))))))...))))).))...... (-19.32 = -20.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:31 2006