Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,793,000 – 16,793,114 |
Length | 114 |
Max. P | 0.556991 |
Location | 16,793,000 – 16,793,114 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -40.58 |
Consensus MFE | -17.16 |
Energy contribution | -15.99 |
Covariance contribution | -1.17 |
Combinations/Pair | 1.48 |
Mean z-score | -1.70 |
Structure conservation index | 0.42 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16793000 114 - 22224390 UGGUC---GGUGGCUUGGCUCAAUUCGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAGACUGCAUGCUGACUACAUCGAAGGAAUUGAAUUCCUUAAAAAAGCCCUGCUAAAUA (((.(---((.(((((.((((.....))))..(((((((((.((....((....))....)))))))))))..........(((((((...)))))))....))))))))))).... ( -36.20) >DroPse_CAF1 364 111 - 1 UAAUU---GGCGAUCUGGCUCAGUUCGAGCGUAGUGUGCAGCUGAUCGCGAAGCCGC---AGCUGCACGCCACUUGUAUGGAGGUGAUGACCUCCUUCAACAAGGCGCUGCAAAAUG .....---.((((.(((...))).)).(((((.(((((((((((...((...))..)---))))))))))..(((((..((((((....))))))....))))))))))))...... ( -46.50) >DroSec_CAF1 394 114 - 1 UGGUC---GGUGGCAUGGCUCAAUACGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAGGUUGCAUGGUGACUACAUGGAAGGGAUAGAAUUCCUAAAAAAAGCCCUGCUAAAUA (((.(---((.(((...((((.....))))....((((.((.((((((.(...((.....))...).)))))))).))))...((((......)))).......))))))))).... ( -32.50) >DroSim_CAF1 1792 114 - 1 UGGUC---GGUGGCAUGGCUCAAUACGAGCGGAGCGUGCAGCUCAUCACGAAUCCUCGUAGGUUGCAUGGUGACUACAUGGAAGGGAUAGAAUUCCUUAAAAAAGCCCUGCUAAAUA (((.(---((.((((((((((.....))))..(.(((((((((....((((....)))).))))))))).).....)))...(((((......)))))......))))))))).... ( -35.40) >DroAna_CAF1 3296 117 - 1 UCGGCGGCGCCGACAGGGCCCAGUUCGAGCGGAGCGUCCAGCUGAUCCACGAUCCCCCGAAGCUCCACAGCCACUGGUUCGACGUGAUGGGCGGCUUCAACAAGGCCCUGGGCAACG (((((...)))))(((((((..(((.((((((.....)).(((.(((.(((.((..(((..(((....)))...)))...)))))))).))).)))).)))..)))))))(....). ( -46.40) >DroPer_CAF1 364 111 - 1 UAAUU---GGCGAUCUGGCUCAGUUCGAGCGUAGUGUGCAGCUGAUCGCGAAGCCGC---AGCUGCACGCCACUUGUAUGGAGGUGAUGACCUCCUUCAACAAGGCGCUGCAAAAUG .....---.((((.(((...))).)).(((((.(((((((((((...((...))..)---))))))))))..(((((..((((((....))))))....))))))))))))...... ( -46.50) >consensus UGGUC___GGCGACAUGGCUCAAUUCGAGCGGAGCGUGCAGCUCAUCAAGAAUCCUCCUAAGCUGCACGCCGACUACAUGGAAGGGAUGGAAUUCCUCAAAAAAGCCCUGCUAAAUA .........((((....((((.....))))....(((((((((.................)))))))))....)))).....((((...................))))........ (-17.16 = -15.99 + -1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:20 2006