Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,781,793 – 16,781,913 |
Length | 120 |
Max. P | 0.645522 |
Location | 16,781,793 – 16,781,913 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -33.83 |
Consensus MFE | -29.41 |
Energy contribution | -29.70 |
Covariance contribution | 0.29 |
Combinations/Pair | 1.11 |
Mean z-score | -1.96 |
Structure conservation index | 0.87 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16781793 120 + 22224390 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGCGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUUUCCGCACUC ......(((((..((....))...)))))(((((.(((((........(((((((((.((((....)))).)))))))))...(((((.(((......))).)))))..))))).))))) ( -36.60) >DroSec_CAF1 18703 120 + 1 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGUGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUAUCCGCACUC ......(((((..((....))...)))))(((((.(((..........(((((((((.((((....)))).)))))))))...(((((.(((......))).)))))....))).))))) ( -36.70) >DroYak_CAF1 18559 117 + 1 UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAAUUAAU---GAUCGAAGAGGCGAAUAUUGUUGGUCGCUCGUAAGGAAAUGCAAACACGUGUCUUUAAUUUUCGCACUC ......(((((..((....))...)))))(((((.(..((......((---((.(((...(((((...)))))..))).))))(((((.(((......))).)))))..))..).))))) ( -28.20) >consensus UUGAAAGCGGAAAGUGAAAGCGCAUCUGUGAGUGGGGGAAAAACUAAUGAUGAUCGAAGAGGCGAACCUUGUUGGUCGUUCGAGAAGAAAUGCAAACACGUGUCUUUAAUUUCCGCACUC ......(((((..(((....))).)))))(((((.(((((...........((((((.((((....)))).))))))......(((((.(((......))).)))))..))))).))))) (-29.41 = -29.70 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006