Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,748,470 – 16,748,616 |
Length | 146 |
Max. P | 0.953950 |
Location | 16,748,470 – 16,748,579 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -12.00 |
Consensus MFE | -10.64 |
Energy contribution | -9.07 |
Covariance contribution | -1.56 |
Combinations/Pair | 1.30 |
Mean z-score | -1.53 |
Structure conservation index | 0.89 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16748470 109 + 22224390 AUAGCACUGAGCAUAAACCAAUACCCUAUAUAA--------ACUUAUAUAACAUGCUAAAUUAUAUAACAGUAAGUGUUUCGAAAACAAGCACACUUAUAUAACAUACCCCAAUAUU .(((((.((.(......)))......((((((.--------...))))))...)))))..(((((((..(((..((((((.......)))))))))))))))).............. ( -11.10) >DroSec_CAF1 35724 103 + 1 ------UUAAGCAUAGGCCAAUCCCCUAUAUAA--------ACUUAUAUAACAUGCUAAAUUAUAUAACAGUAAGUGUUUAGAAAACAAACACACUUAUAUAACAUACCUAAAUAUU ------...(((((.((......)).((((((.--------...))))))..)))))...(((((((..(((..((((((.......)))))))))))))))).............. ( -13.10) >DroSim_CAF1 34072 103 + 1 ------UUCAGCAUAGGCCAAUUCCCUAUAUAA--------ACUUAUAUAACAUGCUAAUUUAUAUAACAGUAAGUGUUUAGAAAACAAACACACUUAUAUAACAUACCCAAAUAUU ------...(((((.((.......))((((((.--------...))))))..)))))...(((((((..(((..((((((.......)))))))))))))))).............. ( -12.90) >DroEre_CAF1 27420 104 + 1 ------UUCAAUAUAGU-------ACUGCAUAAACCGAAAUCCUUGUGUGAGAUAUACAAUUAUAUAUUAGUAUGUGUUUAGAAAAGAAAUACACUUAUAUAACAUAUCCCAAUAUU ------....(((((((-------(((((((((..........))))))..((((((......)))))))))))((((((.......))))))...)))))................ ( -10.90) >consensus ______UUCAGCAUAGGCCAAU_CCCUAUAUAA________ACUUAUAUAACAUGCUAAAUUAUAUAACAGUAAGUGUUUAGAAAACAAACACACUUAUAUAACAUACCCAAAUAUU .........(((((.((.......))(((((((..........)))))))..)))))...(((((((..(((..((((((.......)))))))))))))))).............. (-10.64 = -9.07 + -1.56)
Location | 16,748,503 – 16,748,616 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -14.73 |
Consensus MFE | -11.51 |
Energy contribution | -11.20 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.13 |
Mean z-score | -2.11 |
Structure conservation index | 0.78 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16748503 113 + 22224390 -ACUUAUAUAACAUGCUAAAUUAUAUAACAGUAAGUGUUUCGAAAAC--AAGCACACUUAUAUAACAUACCCCA-AUAUUGCAUUUCAUUGAAAACAAUCAAAGCACUUACACAC---UG -..((((((((.........))))))))..((((((((((.((....--..(((....................-....))).((((...))))....)).))))))))))....---.. ( -14.96) >DroSim_CAF1 34099 113 + 1 -ACUUAUAUAACAUGCUAAUUUAUAUAACAGUAAGUGUUUAGAAAAC--AAACACACUUAUAUAACAUACCCAA-AUAUUGCAUUUCAUUGAAAACAAUCAAAGCACUUACACAC---UG -..((((((((.((....))))))))))..((((((((((.((((.(--((.......................-...)))..))))..(((......)))))))))))))....---.. ( -13.47) >DroEre_CAF1 27447 113 + 1 UCCUUGUGUGAGAUAUACAAUUAUAUAUUAGUAUGUGUUUAGAAAAG--AAAUACACUUAUAUAACAUAUCCCA-AUAUUGCAUUUUCUUGA-AACAAUCAAAGCACUUACACAC---AG ....(((((((((((((((((.....))).))))))((((((((((.--.((((.....((((...))))....-.))))...))))))..)-)))..........)))))))).---.. ( -17.60) >DroYak_CAF1 27254 120 + 1 CCCUUAUAUAACAUAAAAAAUUAUAUAAUAGUAAGUGUUUAGAAAACAAAAAUACACUUAUAUAACAUAUCCCAAAUAUUGCAUUUCCUUGAAAACAAUCAAAGCACUUACACACUACUG ...((((((((.........))))))))..((((((((((.((.......................((((.....))))..((......)).......)).))))))))))......... ( -12.90) >consensus _ACUUAUAUAACAUACAAAAUUAUAUAACAGUAAGUGUUUAGAAAAC__AAACACACUUAUAUAACAUACCCCA_AUAUUGCAUUUCAUUGAAAACAAUCAAAGCACUUACACAC___UG ....(((((((.........)))))))...((((((((((.((......................((............))((......)).......)).))))))))))......... (-11.51 = -11.20 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006