Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,736,277 – 16,736,387 |
Length | 110 |
Max. P | 0.841679 |
Location | 16,736,277 – 16,736,387 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.19 |
Mean single sequence MFE | -32.38 |
Consensus MFE | -23.58 |
Energy contribution | -24.26 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.19 |
Mean z-score | -2.00 |
Structure conservation index | 0.73 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16736277 110 - 22224390 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCUUUUGGGUGACC-------CCACGCAUUACAAAUGCACUACAGCAUUCUACGCUGAAUGUUUUAAUGCUCUUAACUAUA ---((....))...((((((((((...(((..((((((((.....))))))))-------)))))).............((.(((((((......))))))).)).)))))))....... ( -35.40) >DroSec_CAF1 23921 108 - 1 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGAUUACCCCU-UUGGGUGACC-------CCACGUAUUGCAAAUGCACUA-AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUCAACUAUA ---((....))...(((((((((((..(((....((((((..-..))))))..-------)))....)))).........(-(((((((......))))))))...)))))))....... ( -31.80) >DroSim_CAF1 22287 108 - 1 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCU-UUGGGUGACC-------CCACGCAUUGCAAAUGCACUA-AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUUAACUAAA ---((....))...((((((((((...(((..((((((((..-..))))))))-------))))))..(((....)))..(-(((((((......))))))))...)))))))....... ( -37.60) >DroEre_CAF1 15289 114 - 1 ---GCGACAGCAACGGGAGCAGCGAAUAGGAAGGUUACCACU-UUGGGUGACCCCACACCCCACGAAUUAUAAAUGCACUU-AACAUUCUACGUUAAAGGUUU-CAGGCUCGCAACUAUC ---((((..((....(((((........((..(((((((...-...)))))))))........................((-(((.......)))))..))))-)..))))))....... ( -25.20) >DroYak_CAF1 15223 117 - 1 GAAGCGACAGCAACGGGAGCAGCGAAUGGGAAGGUUACCACU-UUUGGUGACCCCAAACCCCACGAAUUACAAAUGCACUU-AACAUUCUUCGACAAAAGUUC-CAUGCUCUCAGCAAUU ...((((.((((...(((((......((((..((((((((..-..))))))))......))))((((.....((((.....-..)))).))))......))))-).)))).)).)).... ( -31.90) >consensus ___GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCU_UUGGGUGACC_______CCACGAAUUACAAAUGCACUA_AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUCAACUAUA ...((....))...(((((((......(((..((((((((.....))))))))...........((((.....)))).))).(((((((......)))))))....)))))))....... (-23.58 = -24.26 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:28 2006