Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,867,332 – 1,867,439 |
Length | 107 |
Max. P | 0.518568 |
Location | 1,867,332 – 1,867,439 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -16.45 |
Energy contribution | -16.90 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.22 |
Structure conservation index | 0.51 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1867332 107 - 22224390 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUGUUCUUAUGUAC-------------AUAUGGAUAUAUGUACGUGUAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...((((((((((...(((((..((((........))))))))).)))))(((((((-------------((((....)))))))))))....)))))..(((((....)))))...... ( -30.00) >DroSec_CAF1 4563 115 - 1 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUGCUCAUAUGUAC----AUACAUA-CAUAUGUAUAUAUUUACGUGUAACUGGGUUAAAGGCAAGGGCCUUAAUUGC ((((((....((((.((((((.((((((((((....)))))))))).))((((((((----(((....-..)))))))))))......))))...))))...)))..))).......... ( -29.20) >DroEre_CAF1 3186 104 - 1 CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCAGGCAUA----------------CAUAUGUAUGUAUUGUAUGUGCAUGUGUACGUGGAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...(((((.(..((((((((..((((((.(((((((((((----------------(....)))))).)))))).)))))))))).))))..))))))..(((((....)))))...... ( -38.10) >consensus CCCGCCCAAGGACCAUUGCGAUUAUGUAGAUGCCGACAUUUGUAUG_UC_UAUGUAC_____UA__UA__AUAUGUAUAUAUGUACGUGUAACUGGGUUAAAGGCAAAGGCCUUAAUUGC ...(((((...............((((........))))...............................((((((((....))))))))...)))))..(((((....)))))...... (-16.45 = -16.90 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:46 2006