Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,723,811 – 16,723,917 |
Length | 106 |
Max. P | 0.618134 |
Location | 16,723,811 – 16,723,917 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.25 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -6.36 |
Energy contribution | -7.72 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.21 |
Mean z-score | -1.92 |
Structure conservation index | 0.30 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16723811 106 + 22224390 C-----GCCUGGAUUUGUGCCUUUCUAUGCAUUCUGCAAUCCCUUCGAGGGAUUCAGGU--AUAAUUCCUUAUACCCUAAAAUCCUUA----UAUAUU---UUUUAUAACCACUUAACAC .-----....(((.((((((((.....(((.....)))(((((.....)))))..))))--)))).)))...................----......---................... ( -21.60) >DroSec_CAF1 4734 100 + 1 C-----GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCACUCCCUUCGAGGAACUUCCGU--AUAAAUCCUUAUACCUUAAUAUCCUGG----UAUUUUCAGUUUUA---------AAUUU .-----(((.((((.....(((((...(((.....))).......))))).......((--((((....))))))......)))).))----).............---------..... ( -16.60) >DroSim_CAF1 4135 100 + 1 C-----GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCACUCCCUUCGAGGAACUCGGGU--AUAAAUCCUUAUACCUUAAUAUCCUGG----UAUUUUCAGUUUUA---------CAUUU .-----..(((((....((((......(((.....))).........((((....((((--((((....)))))))).....))))))----))..))))).....---------..... ( -21.50) >DroEre_CAF1 3378 104 + 1 UAUUGGAGCUGCAUUAUUGGCUUGCUAUGCAUUCUGCAAACCCUUCGAGGGACUCAGGUCUAUAAAAAC--AGUCCUUAAAAUCUUGGGCAUUGUCUCAAAUCAUA-------------- ..(((..((....((((.((((((...(((.....)))..(((.....)))...)))))).))))....--.((((..........))))...))..)))......-------------- ( -22.60) >DroYak_CAF1 3659 96 + 1 C-----GGCUGGAUUAUUGGCUUGCUUUGCAUUCUGCAAUCCCUGCAAGGGACACAGGU--AUAAAAGC--AU----UGAAUCAUUUA--GUUGUCUCAAAUAAUA---------CAUUU (-----((((((((.(((.(..((((((....((((...((((.....))))..)))).--...)))))--).----).))).)))))--))))............---------..... ( -24.20) >consensus C_____GCCUGGAUUUUUGCCUUGCUAUGCAUUCUGCAAUCCCUUCGAGGGACUCAGGU__AUAAAUCCUUAUACCUUAAAAUCCUGG____UAUCUUAAAUUUUA_________AAUUU ....(((((((................(((.....))).((((.....))))..)))))))........................................................... ( -6.36 = -7.72 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:11 2006