Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,723,497 – 16,723,613 |
Length | 116 |
Max. P | 0.565788 |
Location | 16,723,497 – 16,723,613 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.65 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -25.48 |
Energy contribution | -25.84 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.78 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16723497 116 - 22224390 CAAAAACAUUUU-GGAAAAAAACGGAGUAGAGAACGCUGAAAAUAAACU---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG .....((.((((-(((..((..(...((...(((.((((((......((---......))....)))))).))).))((((.....((....)).....)))))..))..))))))))). ( -32.60) >DroSec_CAF1 4421 115 - 1 CAAAAACAUUUA-GGAAAAAAACGGAGUAGAGAACGCUGCAAACA-ACA---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG ......(((((.-(((......((((((.(((..(.((((.....-...---...)))).)...))).)).)))).(((((.....((....)).....)))))......)))..))))) ( -32.20) >DroSim_CAF1 3821 115 - 1 CAAAAACAUUUU-GGAAAAAAACGGAGUAGAGAACGCUGCAAACA-ACA---AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGACUCGUCCGGAAGUG .....((.((((-(((......((((((.(((..(.((((.....-...---...)))).)...))).)).)))).(((((.....((....)).....)))))......))))))))). ( -33.00) >DroEre_CAF1 3063 116 - 1 CAAAAACAUUUUUGAAAAAAAACGGAGUAGAGAACACUGAAAACA-ACA---AAAGCGGAGCAAUUCAGCAUUCGGCGGGCGUAGUCCGGAAGGUCGGAGCACGGAUUCGUCCGGAAGUG ......(.(((((....))))).)..........((((.......-...---....((((((......)).)))).((((((.((((((....((....)).))))))))))))..)))) ( -27.20) >DroYak_CAF1 3343 118 - 1 CGAAAACAUUUU-GGAAAAAAACGGUGUAGAGAACACUGAAAACA-ACAACGAAAGCGGACCAAUUCGGCAUGCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG .....((.((((-(((......((((((.....))))))......-....((((.(((..((.....))..)))..(((((.....((....)).....)))))..))))))))))))). ( -37.40) >consensus CAAAAACAUUUU_GGAAAAAAACGGAGUAGAGAACGCUGAAAACA_ACA___AAAGCGGGGCAAUUCAGCAUUCGGCGGGCGUAAUCCGGAAGGUCGGAGCCCGGAUUCGUCCGGAAGUG ......((((((..........(((.((.....)).))).................((((..(((((.((.....))((((.....((....)).....)))))))))..)))))))))) (-25.48 = -25.84 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:10 2006