Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,720,695 – 16,720,813 |
Length | 118 |
Max. P | 0.617871 |
Location | 16,720,695 – 16,720,813 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -18.76 |
Energy contribution | -19.38 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.22 |
Mean z-score | -1.61 |
Structure conservation index | 0.70 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16720695 118 - 22224390 AAAACUUUGGUUGCAUGUUACAAACCGGCAAAUUAUUCUAAAUGCCGCUUCCUUCAUGCAGUAUUUCAC-GAGUGUUGUUUUGAUAGGCAAACAUAUUUUGGUAUUUUACUAUCGAAAC ...((((((((((((((........(((((............))))).......)))))))....))).-))))...((((((((((..(((.((((....))))))).)))))))))) ( -25.26) >DroSec_CAF1 941 117 - 1 AAAACUUUGGUUGCAUGCUACA-ACCGGCAAGUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC-AACUGUUGUUUUGGUAGGCCAGCAUAUUUUGGUAUUUUACUAUAGAAAC (((((..(((((((.((((...-...)))).........((((((.((.........)).)))))).))-)))))..)))))((((((((((......)))))...)))))........ ( -26.40) >DroSim_CAF1 1207 117 - 1 AAAACUUUGGUUGCAUGCUACA-ACCGGCAAGUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC-AACUGUUGUUUUGGUAGGCCAGCAUAUUUUGGUAUUUUACUAUCGAAAC ........((((((.((((...-...)))).........((((((.((.........)).)))))).))-))))...(((((((((((((((......)))))......)))))))))) ( -27.80) >DroEre_CAF1 766 113 - 1 AAAAUGUUGCUUGCAAGCUACA-ACCGGCAAAUUAAUCUAAAUGCCGCC----CCAUGCGGUAUUUUGCCAAGUGCUGUUUUUUCGAACCAACAUAU-UUGGUAUUUUAAUAUCGAAAU ....(((.(((....))).)))-..(((((.........(((((((((.----....))))))))).......)))))...(((((((((((.....-))))).........)))))). ( -27.59) >consensus AAAACUUUGGUUGCAUGCUACA_ACCGGCAAAUUAUUCUAAAUGCCGCUUCUUUCAUGCAGUAUUUCGC_AACUGUUGUUUUGGUAGGCCAACAUAUUUUGGUAUUUUACUAUCGAAAC ..........(((((((........(((((............))))).......)))))))................(((((((((((((((......)))))......)))))))))) (-18.76 = -19.38 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:06 2006