Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,660,212 – 16,660,304 |
Length | 92 |
Max. P | 0.988955 |
Location | 16,660,212 – 16,660,304 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.01 |
Mean single sequence MFE | -19.15 |
Consensus MFE | -18.69 |
Energy contribution | -18.75 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.66 |
Structure conservation index | 0.98 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16660212 92 - 22224390 CGAUCGAUCUGUUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCAUUUUCGGGCAGUUCUAC .....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.20) >DroSec_CAF1 19056 92 - 1 CGAUCGAUCUGCUUUACCACUCUCUAAGCCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC .....(((((((((...........))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.40) >DroEre_CAF1 19389 92 - 1 CGAUCGAUCUGUUUUACCACUCCCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC .....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... ( -19.20) >DroYak_CAF1 19079 92 - 1 CGAUCGAUCUGCUUUCCAACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCGUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC .....((((((.(((..........))).))))))...((((..((((....))))...)))).((((((((........)))))))).... ( -18.80) >consensus CGAUCGAUCUGCUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCGGGCAGUUCUAC .....((((((.((((........)))).))))))...((((....((......))...)))).((((((((........)))))))).... (-18.69 = -18.75 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:38 2006