Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,652,350 – 16,652,452 |
Length | 102 |
Max. P | 0.500000 |
Location | 16,652,350 – 16,652,452 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -12.59 |
Energy contribution | -13.34 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.63 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16652350 102 + 22224390 GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC-----GCCGGCACACUCUCCUUCCCAUUUUCCAGUAUUUUUCAUUUUU------ ((((((----(((((..((((.....))))..))))))))))).......((.((........-----)).))......................................------ ( -18.60) >DroSec_CAF1 11090 108 + 1 GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAUCUC-----GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUUUUCUAU ((((((----(((((..((((.....))))..))))))))))).......((.((........-----)).))............................................ ( -18.60) >DroSim_CAF1 12339 102 + 1 GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC-----GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUU------ (((.((----.((((((((.((.......(....)((...(((....))).)))).)))))))-----)))((........))......................)))...------ ( -18.70) >DroEre_CAF1 11489 106 + 1 GAUAGGUCAGUCGAGUUCGGGCUUCCUUUGUUUUCGGGUUAUCUCUUGAUCCCACAUGAACUUCCCCGGCCGGCACUCUUUCCUUCCUAUUUUCCAUUAUUUU-----AGU------ ((((((......((((.(.((((......((((..((((((.....)))))).....))))......)))).).)))).......))))))............-----...------ ( -23.92) >consensus GAUAGG____UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC_____GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUU______ ((.(((......((((.(.(((.......((((.(((...(((....))).)))...)))).......))).).))))...)))))............................... (-12.59 = -13.34 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:36 2006