Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,863,657 – 1,863,776 |
Length | 119 |
Max. P | 0.688496 |
Location | 1,863,657 – 1,863,776 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -23.34 |
Energy contribution | -23.45 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.90 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1863657 119 - 22224390 AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAACUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAA-AAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUUGUUAUGUGUUUU ..(((...((((((....))))))..)))(((((.((.((((((.(((..((.((((((((((((((......-......)))))))))..))))).))..)))..)))))))).))))) ( -26.00) >DroSec_CAF1 1151 119 - 1 AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACUGCUAUGUAGAAUUAGAAAUGCACAAAA-AAAACAGUAUUUCUAUAAUUUUCCACGGCGAAUUGUUAUGUGUUUC ((((((((.....(((((.......)))))..(((((....)))))((..((.((((((((((((((......-......)))))))))..))))).))..)).......)))).)))). ( -24.80) >DroYak_CAF1 1256 120 - 1 AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAAAAAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUGGUUAUGUGUUUC .(((((.......(((((.......)))))...((((....))))(((..((.((((((((((((((.............)))))))))..))))).))..)))..)))))......... ( -26.62) >consensus AAACCAUAUUGUAUACUUAUAUAAAAGGUAAAAGUCGCUGGCGACCGCUAUGUAGAAUUAGAAAUGCACAAAA_AAAACAGUAUUUCUAUAAUUUUCCACGGCGAUUUGUUAUGUGUUUC ((((((((.....(((((.......)))))...((((....))))(((..((.((((((((((((((.............)))))))))..))))).))..)))......)))).)))). (-23.34 = -23.45 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:38 2006