Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,601,599 – 16,601,700 |
Length | 101 |
Max. P | 0.595035 |
Location | 16,601,599 – 16,601,700 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -24.51 |
Energy contribution | -24.32 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.80 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16601599 101 - 22224390 AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCCACCG-AAGUCAGAUGCAGA------UGCCAA ..(((....(((...(((((((.((((.....)))))))))))........((...((((.((..---..---.))..))))...))-......)))...))------)..... ( -24.60) >DroSec_CAF1 13846 102 - 1 AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCACCCGCAAGCCAGAUGCAGA------UGCCAA ..(((....(((...(((((((.((((.....))))))))))).....(((((..(((((.((..---..---.))..)))))..)))))....)))...))------)..... ( -32.80) >DroEre_CAF1 14008 106 - 1 AAGUCAAAAGUGAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCCCCCG--AGCCAGAUGCAGAUGCAGAUGCCAA ..(((...((((...(((((((.((((.....)))))))))))...))))(((..(((.......---.(---(((((((....)).--..)))))))))..))).)))..... ( -29.70) >DroYak_CAF1 15302 112 - 1 AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAAGAAUAUCUUCUGGGGGCCAACG--AGCCAGAUGCAGAUGCGGUUGCCAA .........(.(((((((((((.((((.....)))))))))))..((((((((....((((.((((.....))))))))(((.....--.)))...)))).))).))))).).. ( -35.10) >consensus AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA___UA___UCUGGGGGCCACCG__AGCCAGAUGCAGA______UGCCAA ...............(((((((.((((.....))))))))))).....(((((....((((.((.........))))))(((........)))...)))))............. (-24.51 = -24.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:14 2006