Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,519,958 – 16,520,078 |
Length | 120 |
Max. P | 0.709244 |
Location | 16,519,958 – 16,520,078 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -18.67 |
Energy contribution | -18.57 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.19 |
Structure conservation index | 0.81 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16519958 120 + 22224390 CAUGAAACAUUCCACAAUAAUCAAGAAUCAUCGUAUAUAAUAUACGUAACAUAAUAAUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGCAUUAUCGUGGCAUUUACUAAACAAAC ...........((((.(((((...(((((...(((((...)))))((((((.......))))))(((........)))........)))))...))))).))))................ ( -20.50) >DroSec_CAF1 880 112 + 1 CAUAUAACAUUCCACGAUAAUCAAGAGU---CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGUUUAUCGUGGCAUUUAGUAUA----- .((((.(.((.(((((((((.(..((((---(.............((((((.......))))))(((........)))........)))))..).))))))))).)).).)))).----- ( -24.30) >DroSim_CAF1 874 112 + 1 CAUAAAACAUUCCACGAUAAUCAAGAGU---CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGCUUAUCGUGGCAUUUACUAUA----- ...........((((((((......(((---((.((((....(((((((((.......))))))(((........))).....))).)))))))))))))))))...........----- ( -24.40) >consensus CAUAAAACAUUCCACGAUAAUCAAGAGU___CGUAAAUAAUAUACGUAAUAUAAUAUUUGUUACGCAUGAAAAAUUGCUCAAAGUGGAUUUCGGAUUAUCGUGGCAUUUACUAUA_____ ...........(((((((((....(((.............(((.(((((((.......))))))).))).....(..(.....)..)..)))...)))))))))................ (-18.67 = -18.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:42 2006