Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,515,678 – 16,515,798 |
Length | 120 |
Max. P | 0.997853 |
Location | 16,515,678 – 16,515,798 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -23.87 |
Energy contribution | -23.59 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.00 |
Structure conservation index | 0.99 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16515678 120 - 22224390 CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUGAUCU .........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -23.85) >DroSec_CAF1 3282 120 - 1 CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUUU .........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -24.15) >DroSim_CAF1 3310 120 - 1 CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU .........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... ( -24.15) >DroEre_CAF1 3283 120 - 1 CAAUAAAAAUAAGUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU ...(((((...(((((.((((((.(((((......)))))(((((((.(((((((....))))))).(....)......))))))).)))))).))))).(((....))).))))).... ( -24.50) >DroYak_CAF1 3290 120 - 1 CAAUAAAAAUGAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAACACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU .........((((.(((...(((((((..........(.(((((((..(((((((....))))))).(....).......))))))).)..........))).)))).))).)))).... ( -23.45) >consensus CAAUAAAAAUAAAUUGCUUUUACAGCUUAUAAAUCUAAGUAUAGCAUCACUUAAGUGCUCUUAAGUUGGAAACUUUUAAGUGCUAUAGUAAAAAUAGCUAGCAUGUAUGUAUUUUAAUCU .........((((.(((...(((((((..........(.((((((((.(((((((....))))))).(....)......)))))))).)..........))).)))).))).)))).... (-23.87 = -23.59 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:38 2006