Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,489,477 – 16,489,590 |
Length | 113 |
Max. P | 0.947087 |
Location | 16,489,477 – 16,489,590 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.95 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -21.18 |
Energy contribution | -20.78 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.21 |
Mean z-score | -1.64 |
Structure conservation index | 0.92 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16489477 113 - 22224390 UAUCCUUUUCCCAUCUGCACCCGUUACAACUACAGCUCACUUACGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG ..........(((...((.....(((((((((((((.....((((...-------.))))........(((((((......)))))))))...)))))))))))....))..)))..... ( -26.30) >DroSec_CAF1 27671 113 - 1 UAUCCUUCUCCCAUCUGCACCCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG ..........(((...((.....((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....))..)))..... ( -24.70) >DroSim_CAF1 24781 113 - 1 UAUCCUUCUCCCAUCUGCACCCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG ..........(((...((.....((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....))..)))..... ( -24.70) >DroEre_CAF1 18673 120 - 1 GAUAAUUUUCCUUUCUGCACACAUUACAAUUUCAACACACUUACGAUUCCCGAUUCCGUGAACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUCG ((.((((..........((((.(((((((...........(((((...........))))).......(((((((......)))))))....)))))))))))..........)))))). ( -18.55) >DroYak_CAF1 19685 119 - 1 GAUCCUUUUCCCUUCUGCACACAUUACAAUUACAACACACUUACGAUUCC-UAUGCCGUAUACUUUCAAGCAAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUUG .......................((((((((((((......((((.....-.....))))........(((((((......)))))))....))))))))))))................ ( -20.40) >consensus UAUCCUUUUCCCAUCUGCACCCAUUACAACUACAACUCACUUACGAUU_______CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCG ..........(((...((.....((((((((((((......((((...........))))........(((((((......)))))))....))))))))))))....))..)))..... (-21.18 = -20.78 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:19 2006