Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,475,096 – 16,475,188 |
Length | 92 |
Max. P | 0.567511 |
Location | 16,475,096 – 16,475,188 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 87.39 |
Mean single sequence MFE | -15.87 |
Consensus MFE | -11.96 |
Energy contribution | -11.90 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.18 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16475096 92 - 22224390 AACAAACACCGAAAAUCGUUAAGUAAACAACACACGCUGCGCUGCGUUCGAUUU--CGAAUGCAUUCCAAUAUAAAAUAGAGUUGUCAGCGAAU ..................................(((((...((((((((....--))))))))...((((..........)))).)))))... ( -17.50) >DroSim_CAF1 10496 93 - 1 AACAAACACAGAAAUUCGUUAAGUAAACAACACACGCUGCGCUGCGUUCGAUUUCUCGAAUGCAUU-CAAUAUAAAAUAGAGUUGUCAGCGAAU .............(((((((......(((((....((...))(((((((((....)))))))))..-..............))))).))))))) ( -18.80) >DroEre_CAF1 4155 83 - 1 AACAAACACAGAAAAUCGUUAAGUAAAC---ACACG-----CUGCGUUCGAUUU--CAAACGCAUU-CAACAUAAAAUAGAGUUGUCAGCGAAU ............................---...((-----(((((((.(....--).)))))...-((((..........))))..))))... ( -12.30) >DroYak_CAF1 5002 83 - 1 AACAAACACAGAAAAUCGUUAAGUAAAC---ACACG-----CUGCAUUCGAAUU--CAAAUGCAUU-CAAUAUGAAAUAGUGUUGUCAGCGAAU ...............(((((.....(((---((...-----.((((((.(....--).))))))((-(.....)))...)))))...))))).. ( -14.90) >consensus AACAAACACAGAAAAUCGUUAAGUAAAC___ACACG_____CUGCGUUCGAUUU__CAAAUGCAUU_CAAUAUAAAAUAGAGUUGUCAGCGAAU ...............(((((......................((((((((......))))))))...((((..........))))..))))).. (-11.96 = -11.90 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:07 2006