Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,445,663 – 16,445,783 |
Length | 120 |
Max. P | 0.638740 |
Location | 16,445,663 – 16,445,783 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -53.33 |
Consensus MFE | -47.69 |
Energy contribution | -48.47 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.02 |
Mean z-score | -1.92 |
Structure conservation index | 0.89 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16445663 120 - 22224390 GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUACUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... ( -52.20) >DroSim_CAF1 115 120 - 1 GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUAGUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... ( -52.20) >DroYak_CAF1 441 120 - 1 GCAGGUUGGGCUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUGGCGUGCGCAUGCUGACUGUUAUAGAGGAGGGAGGGAUGGGCACCGGGAGGCUUAAAGCCACCGCCACUAG ...(((((((((.(((((((((((((.(((((((..(....)..)))))))))))))))).((..((.((....)).))..)))))).))).)))((.(((.....))).)))))..... ( -55.60) >consensus GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUACUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... (-47.69 = -48.47 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:38 2006