Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,412,620 – 16,412,738 |
Length | 118 |
Max. P | 0.998263 |
Location | 16,412,620 – 16,412,738 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -25.57 |
Energy contribution | -24.88 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -3.05 |
Structure conservation index | 0.98 |
SVM decision value | 3.05 |
SVM RNA-class probability | 0.998263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16412620 118 + 22224390 -UAACGGCCAAACAUAAUCGGAAAGAGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA -....(((.........((.....))((((.....(((((((.......)))))))((((((((...((((.................))))....))))))))...)))).))).... ( -27.23) >DroSec_CAF1 33261 118 + 1 -UAACGGCCAAACACAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUUCGUCAUACUGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA -........................((((.((...(((((((.......)))))))((((((((((.((((.................)))).)).))))))))....)).)))).... ( -27.23) >DroSim_CAF1 29491 118 + 1 -UAACGGCCAAACAUAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA -........................((((.((...(((((((.......)))))))((((((((...((((.................))))....))))))))....)).)))).... ( -26.93) >DroYak_CAF1 31284 119 + 1 UAAAUGGCUUAACAUCAUCUGAAAGGGUAUCAAAAUGAGUGAAACAACAACACUUAGCAAAGUUUCCGUCGUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUACUGCCAGCA ....((((........((((....)))).......((((((.........))))))((((((((.(((..(((..........)))..))).....))))))))........))))... ( -22.80) >consensus _UAACGGCCAAACAUAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA .....(((..........(.....)(((((.....(((((((.......)))))))((((((((...((((.................))))....))))))))...)))))))).... (-25.57 = -24.88 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:58 2006