Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,406,159 – 16,406,249 |
Length | 90 |
Max. P | 0.988314 |
Location | 16,406,159 – 16,406,249 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.45 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -5.42 |
Energy contribution | -7.18 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.18 |
Mean z-score | -2.41 |
Structure conservation index | 0.19 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16406159 90 - 22224390 UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-AAUAU-------GUGUGGCU-GUG--UGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA ..............((((..((((-----------------(((..((((((((....-.))))-------))))((((-(((--((.....)))))))))..-.)))))-))..)))). ( -31.70) >DroSec_CAF1 26917 92 - 1 UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-ACUAU-------GUGUGGCU-GUGUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA ..............((((..((((-----------------(((..((((((((....-)).))-------))))((((-(((((.......)))))))))..-.)))))-))..)))). ( -29.30) >DroSim_CAF1 23839 92 - 1 UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-AGUAU-------GUGUGGCU-GUGUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA ..............((((..((((-----------------(((..(((((((.....-..)))-------))))((((-(((((.......)))))))))..-.)))))-))..)))). ( -28.70) >DroYak_CAF1 24847 100 - 1 UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGCCAGUAUAUGCCGUGUGUGCGC-GGCUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA ..............((((..((((-----------------(((...((((..((.((........))))..))))...-((((((((.....))))))))..-.)))))-))..)))). ( -31.20) >DroAna_CAF1 27656 117 - 1 UGGCCAUAGCCACUGCAAUUGAAAUAAAUAGCAUUGCAGUACAGAAAAAAAAAUAAAACAGAAUA---CAUGUGACGCUAAAGUGUGUUCAUUACGUGGUCAAAACUGUUUUUAUUUGCA .(((....)))((((((((.............))))))))..........(((((((((((....---((((((((((......)))))....))))).......))).))))))))... ( -25.02) >consensus UUACAAUUGACAUGGCGAUGGAGG_________________CAGAAACACAUGUGUGC_AGUAU_______GUGUGGCU_GUGUGUGUUCAUUACGCGGUCAA_ACUGUU_UUAUUUGCA ..............((((.............................(((....))).................(((((.(((((.......)))))))))).............)))). ( -5.42 = -7.18 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:48 2006