Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,835,127 – 1,835,231 |
Length | 104 |
Max. P | 0.907089 |
Location | 1,835,127 – 1,835,231 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -18.09 |
Energy contribution | -18.78 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -2.16 |
Structure conservation index | 0.68 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1835127 104 + 22224390 UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGCUUUUGCUUUGCCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU ..((..(((((..((((.((((.....))))))))...))).))..))((.(((...((..(((((((.---...)))))))..)).)))...))............ ( -31.90) >DroPse_CAF1 67277 90 + 1 UUGGUGCAACGUUGCAACGUUCGGUGU-----UG------CUGCUGUUGCUGU------UGUUGCAAUUACAACAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU ..((((((((((.((((((.....)))-----))------).)).)))(((((------(((.......))))))))..)))))....................... ( -22.10) >DroSec_CAF1 36211 98 + 1 UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC------UUUGGCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU .(((.((((((((((...(..(((.(..((...((....)).))..))))..)------.....((((.---...)))))))))))).))..)))............ ( -26.50) >DroSim_CAF1 35644 98 + 1 UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC------UUUGGCAACU---GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU .(((.((((((((((...(..(((.(..((...((....)).))..))))..)------.....((((.---...)))))))))))).))..)))............ ( -26.50) >consensus UUGGUGCAGCGAUGCAAUGUGCAAUGUGCAUUUGCUUGUGCUUGUGCUUGUGC______UUUGGCAACU___GCAGUUGGCAUUGUUAGUUUUCAUUUUCACAUUAU .(((.((((((((((...((((((.(((((......))))))))))).................(((((.....))))))))))))).))..)))............ (-18.09 = -18.78 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:24 2006