Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,377,923 – 16,378,043 |
Length | 120 |
Max. P | 0.992216 |
Location | 16,377,923 – 16,378,043 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -35.11 |
Consensus MFE | -34.17 |
Energy contribution | -33.40 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.11 |
Mean z-score | -2.95 |
Structure conservation index | 0.97 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16377923 120 + 22224390 CCGGCUGCUUUUGCAGAUUUCGCCAUUUUGAGGUCCUUCAAUAACUUCAUUUUGGCUAUAAUCGAGCUGCACUCUAUCAUGUCGUUGGGCCCGCUAACCACAUUCUCUAGCUCUUCCUUG ..((((((....)))).....((((...((((((.........))))))...)))).......((((((.........((((.(((((.....))))).))))....))))))..))... ( -29.22) >DroSec_CAF1 4860 120 + 1 CCGGCUGCUUUUGCAGAUUUCGACAUUUUGAGGUUCUUCAAUAGCUUCAUUUUGUCCAUGAUCGAGCUGCACUCUACCAUGUCGUUGGGCCCGCUAACCACAUUCUGCAGCUCUUCCUUG ..((.(((....)))((((..((((...(((((((.......)))))))...))))...))))((((((((.......((((.(((((.....))))).))))..))))))))..))... ( -35.20) >DroSim_CAF1 732 120 + 1 CCGGCUGCUUUUGCAGAUUUGGCCAUUUUGAGGUCCUUCAAUAGCUUCAUUUUGGCCAUGAUCGAGCUGCACUCUACCAUGUCGUUGGGCCCGCUAACAACAUUCUGCAGCUCUUCCUUU ..((.(((....)))((((((((((...((((((.........))))))...)))))).))))((((((((.......((((.(((((.....))))).))))..))))))))..))... ( -40.90) >consensus CCGGCUGCUUUUGCAGAUUUCGCCAUUUUGAGGUCCUUCAAUAGCUUCAUUUUGGCCAUGAUCGAGCUGCACUCUACCAUGUCGUUGGGCCCGCUAACCACAUUCUGCAGCUCUUCCUUG ..((.(((....)))((((..((((...((((((.........))))))...))))...))))((((((((.......((((.(((((.....))))).))))..))))))))..))... (-34.17 = -33.40 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:22 2006