Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,832,791 – 1,832,896 |
Length | 105 |
Max. P | 0.686025 |
Location | 1,832,791 – 1,832,896 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -18.38 |
Consensus MFE | -13.11 |
Energy contribution | -12.93 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.21 |
Mean z-score | -1.92 |
Structure conservation index | 0.71 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1832791 105 + 22224390 ACCUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUCAUAUCCUAUCGAUUUGAAUACCCACCAUCUUAGUUUUCUUUUC ..............(((.--((((((((((....(((....))))))))))))).......((((.(((.....))).))))....))).................. ( -15.50) >DroSec_CAF1 33344 105 + 1 ACUUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUUAUAUUCUAUCGAUUUGAAUAUGCACCAUCUUAAUUUUAUUUUC ..............((((--((((((((((....(((....)))))))))))))..........((((((.........)))))))))).................. ( -19.70) >DroSim_CAF1 32518 105 + 1 ACUUUUUCCUUGCAGUGC--GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUUAUAUUCUAUCGAUUUGAAUAUGCACCAUCUUAAUUUUAUUUUC ..............((((--((((((((((....(((....)))))))))))))..........((((((.........)))))))))).................. ( -19.70) >DroEre_CAF1 32938 107 + 1 ACCUUUUCCAUGCAGUGCGCGGGUAAUUGCUAUUCGAUAUUUUGGCAAUCGCCUAGUUUCACUCAUAUUCUAUCGAUUUGAACAUCCACCAUCUUAUUUUUCAUUCG .........(((.((((.(((((..(((((((..........)))))))..))).))..))))))).......(((..((((.................)))).))) ( -18.63) >consensus ACCUUUUCCUUGCAGUGC__GAGUAAUUGUUAUUCGAUAUUUCGGCAAUUGCUUAGUUUCUUUCAUAUUCUAUCGAUUUGAAUAUCCACCAUCUUAAUUUUAUUUUC ..............((((..((((((((((....(((....))))))))))))).......((((.(((.....))).))))...)))).................. (-13.11 = -12.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:23 2006